<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26620
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MPLILESGMNGPMQVDQLDVDDLFGDGVGLSLHTARPPTKHLRQRIDELRTRGCCQGVAWSKSGAIASISPDGKTLEARFLRSHPDDGNWGLSEPTKVDLISINASSPIVHLAWASTANPELAVIDATGRVAILTYSITLNRPFATRKWDHDPSDDLHAIVGSYWLPLAPQAKQYYVSHGPAVKDGNQYRYESSFVHAYGPWHPNTSKSALLCVTTNGHLKMFWAQNNNKIEETTLELESVNSSDDLITHAALHSDKSNLWIALATTSKQLRLVRVGINWGLPQSQSDNKPPPGSQALNPTLQEKHVAITSWLPSGSSTTPIDSAANQLTHLEILPSTLDHTGQGWAPLIILAVRTYLPTPNTPYQETQSIIDKWEVLNDQAQSLHPAFEQLGSRRNSTGAGPAPTSRLKKHDPVIVNKVIIGVHTLQFGRVICLAFSDGSVEYRDRFTLQEIYNEINLDRVMTLNQVGFTFQDESPCLQMAFSPTNCSVVKIQDDGKAKWSKLHYPLGDIGNSSQDAPYAATLAALTVAASTATFNNINYDDILAVARPYADKKRFTFDWINEIVRMLKVPVDYSEDTHHDSLVRNSSLQMCLSILNHLGYKGMFQPRSFGSKFAMLALNARNVVILITIASNTPVNIREKLSPLDEHEVVEALAGCAKWSLDLLSWLTDSLFALLDDPQFLALLTPQRFSEMSTYLQSRSDVSLHLLLCSSTRGFLSAVCRRILHLEILSNRAIEFYERRAAMQNATDPSAQAKGPHVVLYKAYQKMQRVTSGSLIKVQEFDRLLTVLNNDIRSAYQSSLASLAAKNPPGPGGQKAIDAQIKNAQIHCELNMLLASSPPPAFHHVLLKFFNSDLKAYRAQADPSKLFFADFDLLEIDDDRRTLATRKAKGRYIDVFKRIELAAPPARGTKEGDEAKMAQWRRCVRCSAIMEDVFGSRPGFTFVLAQQRKCSCGGHWGLLPKGALII |
Length | 968 |
Position | Tail |
Organism | Colletotrichum graminicola (strain M1.001 / M2 / FGSC 10212) (Maize anthracnose fungus) (Glomerella graminicola) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Hypocreomycetidae> Glomerellales> Glomerellaceae> Colletotrichum>
Colletotrichum graminicola species complex.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.231 |
Instability index | 42.98 |
Isoelectric point | 7.62 |
Molecular weight | 107272.92 |
Publications | PubMed=22885923
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP26620
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 92.88| 23| 93| 152| 174| 1
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152- 174 (45.02/34.67) DPS.DDL..HAIVGS....YWLPLAPQAKQ
242- 270 (30.71/20.81) NSS.DDLitHAALHSdksnLWIALATTSKQ
299- 314 (17.15/ 7.68) NPTlQEK..HVAITS.....WLP.......
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 212.91| 71| 438| 16| 106| 4
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16- 106 (110.53/86.00) DQLDVDDLFG.DGVGLSLHTARPptkhlrqridelrtrgcCQGVAWSKSG.AIASISPDGKtleARFLRSH.P..DDGNWGLSEPTKVDL..ISINAS
455- 532 (102.38/51.15) NEINLDRVMTlNQVGFTFQDESP.................CLQMAFSPTNcSVVKIQDDGK...AKWSKLHyPlgDIGNSSQDAPYAATLaaLTVAAS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 67.14| 18| 24| 910| 928| 5
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910- 928 (31.96/28.55) GTKEGDEAKMAQWRRCvRC
937- 954 (35.18/25.96) GSRPGFTFVLAQQRKC.SC
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 63.76| 19| 393| 317| 335| 7
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317- 335 (33.53/18.00) SSTTPIDSA.ANQLTHLEIL
712- 731 (30.22/15.62) SSTRGFLSAvCRRILHLEIL
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