<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26612

Description Mediator of RNA polymerase II transcription subunit 14
SequenceMENGGLNGTHLNHDRSMKANGINGGKMEGQPSPNKGKAPAETPASDNIANGAPDSQGKQQSQMSTGLTLQQKPRMNDLPEEIVHITQGYIPLSMIVSRLAQRTHEDLQKTILDMAAIKWAPPAVNGNTPHGTDAPDDMSEGNKRRKMLMLKFAQDAHSKWVKALVITDWSRNAEAVSKLIDIKAHIDSKRMLFDFCQDLLIDLKRSLISARLPNPDLKTALQVLTTGEASWIPEPGYNPPPPLTPEEQLKWIDDLNTMLSLRLNLDDYDKIPHQFKNYTIQSGRVTFKVKGEFEVDLTIADEDFTKQFWFIDFRFAFSPSSSKLSDALVSYLELKVNEILGQDGLEGCYRFLHEFVLTHKINELRRQALELSRSTWTGTLMVEPLNRALALQYWTTRYGPNGPKSWVMVAVNSAKKTNGQTDPKHSSRLVARWYRDNKEVRDVFLPFDVDNLCAEDLLKTAVARHVEHILSSIHNKLLSYPRFVKRESSMTLKISRTEPMESSLSMQLGSRDNVTLIIQPVTGFAAIKPHTKYSLNGENRLNYGGKDPAEDGVTCLENIRWGYVIEEFNRRGRSVGWRACKSPIGSEDIKQIIRTREAFQTIFLQRQGLGQEWFVMVSLSLSGDEWWLLEVDRNTPARPIKFQTKLELTRGQPDLDDAFWSNLTLFVTGIITQATDLEDLHQREVKYLRRESTNYALPQQIRLPSLLLRLSQILQSSETNLHNTSKEAPNGSSNHNSSWAQDQIEVKFKGLQPQPSGTQGPDGNAHSGAEALENVRLNTVVDAIVRVKDKAKFALLKGRIDRDICFNPRRGEFIFRIRQLVGQPILRTLTTHVKSIDRLVGFLEAMGKARGDVKCERVSLRQVIFTYSDIKMPSESDTIQKPKRWRVSLDLAKSDIRMYLERGNPHVRVLDLLTTLVNTQNGLKAILIYMPLLLPILKTLDNIESKWEPLATTNQGRLEIFARTIDWIALRYSLPGPNGQQRILGLEIRGKVRRSEVWWHFTRATPGPGGPPPPEEEFNRVLKGIWESHGDGWRGLTTGAAALPGPSTMQLLTKLDDAVRAYAVTGDISKAPSIQGAQTQSSQTFSASESFSTQPTSVSQGSNRSSGGSKQAPLVLD
Length1117
PositionTail
OrganismColletotrichum graminicola (strain M1.001 / M2 / FGSC 10212) (Maize anthracnose fungus) (Glomerella graminicola)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Glomerellales> Glomerellaceae> Colletotrichum> Colletotrichum graminicola species complex.
Aromaticity0.07
Grand average of hydropathy-0.467
Instability index44.02
Isoelectric point9.08
Molecular weight125621.62
Publications
PubMed=22885923

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU365082
GO - Cellular Component
mediator complex	GO:0016592	IEA:UniProtKB-UniRule
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:UniProtKB-UniRule
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP26612
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     314.15|     100|     506|      27|     129|       1
---------------------------------------------------------------------------
   27-   92 (93.63/56.12)	..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ME...GQPSPN.KGKAPAETPAS..DNIANGAPDSQGKQQSQM......STGLTLQQKPRMNDLPEEIVHITQGYIPL
   93-  129 (21.84/14.59)	SMIVSRLAQrthEDLQKTILDMAAIKWAPPAVNGNTP...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
  535-  602 (75.34/43.32)	.....................................hgtdapddmsegnkrrkmlmlkfaqdahskwvkalvitdwsrnaeavsklidikahidskrmlfdfcqdllidlkrslisarlpnpdlktalqvlttgeaswipepgynppppltpeeqlkwiddlntmlslrlnlddydkiphqfknytiqsgrvtfkvkgefevdltiadedftkqfwfidfrfafspsssklsdalvsylelkvneilgqdglegcyrflhefvlthkinelrrqalelsrstwtgtlmveplnralalqywttrygpngpkswvmvavnsakktngqtdpkhssrlvarwyrdnkevrdvflpfdvdnlcaedllktavarhvehilssihnkllsyprfvkressmtlkisrtepmesslsmqlgsrdnvtliiqpvtgfaaikphtkysLN...GENRLNyGGKDPAEDGVTclENIRWGYVIEEFNRRGR.......SVGWRACKSPIGSEDIKQIIRTREAFQTI
  603-  715 (123.34/77.75)	FLQRQGLGQ...EWFVMVSLSLSGDEWWLLEVDRNTP............................................................................................................................................................................................................................................................................................................................................................................................................arpikfqtkLEltrGQPDLD.DAFWSNLTLFV..TGIITQATDLEDLHQREVkylrreSTNYALPQQIRLPSLLLRLSQILQ.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.53|      27|     366|     429|     469|       4
---------------------------------------------------------------------------
  441-  469 (38.00/56.79)	RDVFLpFDVDNLCAEDLLKTaVARHVEHI
  810-  836 (46.53/24.79)	RGEFI.FRIRQLVGQPILRT.LTTHVKSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     150.58|      43|      66|     974|    1018|       5
---------------------------------------------------------------------------
  974- 1018 (77.99/51.72)	LPGPNGQQRILGLEirGKVRRSEVWWHFTRATPGPGGPPPPEEEF
 1043- 1085 (72.59/42.28)	LPGPSTMQLLTKLD..DAVRAYAVTGDISKAPSIQGAQTQSSQTF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26612 with Med14 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MENGGLNGTHLNHDRSMKANGINGGKMEGQPSPNKGKAPAETPASDNIANGAPDSQGKQQSQMSTGLTLQQKPRMNDLPEEIV
2) SKAPSIQGAQTQSSQTFSASESFSTQPTSVSQGSNRSSGGSKQAPLVLD
1
1069
83
1117










Molecular Recognition Features






MoRF SequenceStartStop




NANANA