<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26597

Description CRE-SUR-2 protein
SequenceMTEREKTAAVPAPEDVIEMDDSFSPQFVMEVNKIKSHIRKLVEDNPTRKFFAPLTSNLGDNTAILRIQFNNMMSKMEEKEKQSLVKELIKLVHHVAEKNSLDRVFVAASYERVVDTLLRFAHEKEVITTTLCVEGLIMTSDFRLCSRICQEKWKFIYECIPTIDYKGIRNILRYILESQLRRLPYTLSPEKVNELRIVENVILKIVDRDSNLMPPLITLSEIMRGMPKQAQMLPRLTEKLSNLSSHFRPIADLTHVCSRSFIYPIPSHPAYYPPTSFWEDFGLNVNNTFVQSHHMLPYRPEHKASCLYTLYMIVRQPNGKESLHPQNKSKTKQHWEMLVAVMMCEAMGEAEVLPENEPIPRYQWDNITNLVIYGMQHHLLSPQSFFKTVWRLLRQCKYTRARDEVMWIVFQVVSSLPNAIRLDDAIQEIVDLYNILFDGDVVWMGASDHPALFARFLAAAGTWMLLTKDFPDKMPPPNDTIKSHIRFIQDGADNFDSKNTAMLAVLANVYRGDTKVGKNVFPAIVQTIDAPSDPAHPLFELSYQRKAANSFSVFSAEFLDALTLRSKKQLLNSVCHFLRQFSAEKLPSPSVFEIIARICLSEDCEAAIKDLESLAQRSLVVSSTSDRGSVENQNIQSKDQCHFLFDFLAYRIPYHYRYSKYLTTFHSLCHYFSLHIVNNPQNHQIYRLLEQFFLRRMCWKSFHENIQCYTSLFGASSKDNSLMRFFLHPRTFTVPVDQYQFPLNPEMFKMSIYAFLRAIKITGQEVVTEGTMHPYHVAGYGWPEKSTSYFPKWALEIIKNTDATKLLPNYEEILTKTRETARLHPSLTPNQFVMRYGDDQDPTTFYCMMAVLFKFAYAAVDSKWDITSEFYEVLEKKSPKDIVVMGNYLIDYIIADVKTQDCNEQTFKNIAKAAAVLVFTHQIQRADRFLLSLIMHPGNDEDALICIQIANEFILTTEFQDRIRWFYQNVPRKDQHPDEYIKAIVKYHDAFPEFEACELVSKYDNSTNPHMPTYYGCLIERLLPILDQYVYVALEQQGYKMNPQVLQTVAMFYKYHAMPIHFMYSVLFTSHGLMSGPDAKSFVTTFAAQIEECHLTEAFEKFNHQKTSCEQLMMELLDRLSASLDFILTPPPFVAKNWKMAELPPGAQTLYLACIEIMASPHSPETLVTAMINVMQMKPHLRPLNLLNLIGLLITALPSTYSDALHEEFINVFKNGETKCLKFEEIVFDNYEENLLLHLPNRARSINMITQIYWTHCNLNLLNPFAQEQVPKLLEHVKTEKDLWYTLRLVMPILRRFWDNWDTAKQMRSLRERFGPLFIVKLIIEKLGSMAEEGVGFEHEQAFCDLFYNCKYVFAGDFLRDTAITEFAKLPESMRERLKFYVSQSEPAQQNTPEREKSPEKSKDEQKEQETTQPSAQHHPQDSQPSTSSMTQQQHMLQQQQLQQQQLQQQQQLQQQQQLQQQQQQQQVLHNNPLSQLMPPPQQPLQHHLHHPQHQMDHHQAPPTPAPPTPQQQHHQQMAMGMGMGGGHMTPQYPGAVFHHPQGLGSHPMQQYGMQHHLQHPHHPHHQQMQGQMHMNQMMHGMTPQQQYAYMQMQQQHYMQQQQQQHHHQQPPHM
Length1614
PositionTail
OrganismCaenorhabditis remanei (Caenorhabditis vulgaris)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.10
Grand average of hydropathy-0.411
Instability index53.24
Isoelectric point6.46
Molecular weight187893.62
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblMetazoa

GO - Biological Function
GO - Biological Process
defense response to Gram-positive bacterium	GO:0050830	IEA:EnsemblMetazoa
regulation of protein catabolic process	GO:0042176	IEA:EnsemblMetazoa
regulation of transcription by RNA polymerase II	GO:0006357	IEA:EnsemblMetazoa









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26597
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     155.97|      15|      15|    1432|    1446|       1
---------------------------------------------------------------------------
 1432- 1446 (31.75/14.80)	QQQHMLQ......QQQLQQQQ
 1449- 1463 (28.90/12.70)	QQQQLQQ......QQQLQQQQ
 1464- 1478 (20.18/ 6.27)	QQQQVLH......NNPLSQLM
 1480- 1500 (20.71/ 6.66)	PPQQPLQhhlhhpQHQMDHHQ
 1554- 1568 (26.22/10.72)	MQHHLQH......PHHPHHQQ
 1594- 1607 (28.20/12.18)	QQQHYMQ......QQQ.QQHH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     172.49|      54|      64|    1262|    1320|       2
---------------------------------------------------------------------------
 1262- 1292 (41.70/19.70)	....................................L..NPFAQEQVPKLLEHVKTEKDLWYTLRLVMP
 1293- 1355 (75.19/61.48)	ILRrfwDNWDT..AKQMRSLRERFgPlFIVkliiekL..GSMAEEGVG..FEHEQAFCDLFYNCKYVFA
 1358- 1404 (55.60/30.54)	FLR...DTAITefAKLPESMRERL.K.FYV......SqsEP.AQQNTPEREKSPEKSKD..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.16|      13|      65|     575|     587|       3
---------------------------------------------------------------------------
  575-  587 (27.34/13.17)	CHFLRQFSAEKLP
  641-  653 (27.82/13.51)	CHFLFDFLAYRIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     198.54|      64|      70|      55|     124|       5
---------------------------------------------------------------------------
   55-  124 (85.01/64.44)	TSNLGDNTAILRIQFnNMMSKMeEKEKQSLVKELIKLVHHVAEKNSLdRVFVAASYERVVDTLlrfAHEK
  128-  191 (113.53/63.71)	TTTLCVEGLIMTSDF.RLCSRI.CQEKWKFIYECIPTIDYKGIRNIL.RYILESQLRRLPYTL...SPEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     186.63|      49|      98|     832|     881|       6
---------------------------------------------------------------------------
  732-  774 (57.00/30.39)	FTVPVDQYQFP.....LNPEMFKMSIYAFLRAI........KITG...Q..EVVTEGTmhP..
  776-  821 (46.63/23.57)	HVAGYGWPEKSTSYF...............PKWaleiikntDATKllpNYEEILTKTR..ETA
  832-  881 (83.01/52.48)	FVMRYGDDQDPTTFYcMMAVLFKFAYAAVDSKW........DITS...EFYEVLEKKS..PKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.55|      15|     120|    1411|    1425|       8
---------------------------------------------------------------------------
 1411- 1425 (32.49/15.01)	TTQ.PSA.QHHPQD..SQP
 1530- 1548 (21.06/ 7.20)	TPQyPGAvFHHPQGlgSHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.87|      15|      17|    1148|    1164|       9
---------------------------------------------------------------------------
 1144- 1158 (28.17/13.25)	PPGAQTLYLACIEIM
 1161- 1175 (28.71/20.55)	PHSPETLVTAMINVM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.22|      15|      17|     202|     216|      11
---------------------------------------------------------------------------
  202-  216 (25.20/15.91)	ILKIVDRDSNLMPPL
  222-  236 (27.02/17.66)	IMRGMPKQAQMLPRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.53|      14|      70|     437|     452|      12
---------------------------------------------------------------------------
  437-  450 (28.01/21.23)	FDGDVVWM.GASDHP
  457-  471 (21.53/ 7.76)	LAAAGTWMlLTKDFP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26597 with Med23 domain of Kingdom Metazoa
Unable to open file!