<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26584

Description Mediator of RNA polymerase II transcription subunit 18
SequenceMSTQVSISGLVQVELYQSLLNRLANHTHSFSHFNSREIGFDRGPLETISEDSNLLTLKHTIRTPGIIENDSPINYKNPIRNGWSLISLGRIEPERLSPEFSIRPIHFCPIIAGNPIEFVSALGYRRTFEYFRRGVQFVRGGVIIEIFRVYHSEDDEKPMAGADLHLITVTAIIPSAVRVSNPTNPTGTAAGTTGTTTTGTTGTTTTTTNTTNPTAAAATTTTTTTTTSSSSANSGPTVQELRNEACARVREIQAILKGLADLGRVEPF
Length268
PositionHead
OrganismPuccinia graminis f. sp. tritici (strain CRL 75-36-700-3 / race SCCL) (Black stem rust fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina> Pucciniomycetes> Pucciniales> Pucciniaceae> Puccinia.
Aromaticity0.06
Grand average of hydropathy-0.228
Instability index35.85
Isoelectric point6.66
Molecular weight29089.29
Publications
PubMed=21536894

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364150
GO - Cellular Component
core mediator complex	GO:0070847	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central
GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central
termination of RNA polymerase II transcription	GO:0006369	IBA:GO_Central

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP26584
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.27|      15|      15|     192|     206|       1
---------------------------------------------------------------------------
  192-  206 (26.21/10.08)	TTGTTTTGTTGTTTT
  210-  222 (22.18/ 7.56)	TTNPTAAAAT..TTT
  223-  237 (23.88/ 8.62)	TTTTTSSSSANSGPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.30|      15|      17|      48|      62|       2
---------------------------------------------------------------------------
   48-   62 (24.37/14.11)	ISEDSNLLTLKHTIR
   66-   80 (26.93/16.19)	IIENDSPINYKNPIR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.46|      19|      29|      95|     116|       4
---------------------------------------------------------------------------
   95-  116 (29.96/28.27)	RLSPEFSIRPIHFcpiIAGNPI
  125-  143 (34.50/21.65)	RRTFEYFRRGVQF...VRGGVI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26584 with Med18 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) VRVSNPTNPTGTAAGTTGTTTTGTTGTTTTTTNTTNPTAAAATTTTTTTTTSSSSANSGPTVQELRNEACA
177
247










Molecular Recognition Features






MoRF SequenceStartStop




NANANA