<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26580

Description Uncharacterized protein
SequenceMGASLVARVEGIGVDAFQLVTDRLLRDHQALPRERWLAVIRSFRQPLPPIEHATKPPDRQDDALDDRNKGKKQRTMYCLRHSGKPGQLVALIEDAEAPIRSHEDRTSQQPDLSSPFDSNEFHKKTEDDPPASQNHEKHTGDVNTADSQPTPVDQPSTNHNGTETAAPHIAVTTEQESADMVLDGAIKTPSVKIAPSHYRVSIVSVPDSFEQLLSSTICAPQTSLIPSAWCPRPNIVAIEGMSWGIYSSSFESEISPTSNMGSMASSMWTKDTQPDWWIRLGTVTNKGATSGNTSLSWLILELECAASPIELDPSFELLESVMHALLRPDGKLLVKPFRPTARSLMEAGLTSEESNLTTSSPHPPKTATLRNGYCMLMLAKQESLI
Length385
PositionHead
OrganismPuccinia graminis f. sp. tritici (strain CRL 75-36-700-3 / race SCCL) (Black stem rust fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina> Pucciniomycetes> Pucciniales> Pucciniaceae> Puccinia.
Aromaticity0.05
Grand average of hydropathy-0.474
Instability index61.23
Isoelectric point5.40
Molecular weight42275.09
Publications
PubMed=21536894

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26580
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     108.75|      22|      38|     208|     229|       2
---------------------------------------------------------------------------
  177-  198 (34.61/18.08)	SADMVLDGAIKTPSVKIAPSHY
  208-  229 (39.05/21.18)	SFEQLLSSTICAPQTSLIPSAW
  249-  268 (35.09/18.42)	SFESEISPT..SNMGSMASSMW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.88|      25|      38|      22|      46|       3
---------------------------------------------------------------------------
   22-   46 (43.97/32.04)	DRLLRDHQALPRERWLAVIRSFRQP
   61-   85 (44.91/32.87)	DDALDDRNKGKKQRTMYCLRHSGKP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26580 with Med20 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QLVALIEDAEAPIRSHEDRTSQQPDLSSPFDSNEFHKKTEDDPPASQNHEKHTGDVNTADSQPTPVDQPSTNHNGTETAAPHIAVTTEQESADMVLDGAI
2) QPLPPIEHATKPPDRQDDALDDRNKGKKQRTMYCLR
87
45
186
80










Molecular Recognition Features






MoRF SequenceStartStop




NANANA