<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26571

Description Uncharacterized protein
SequenceMPHPHNLINPSRANHQDKQAATEQDSSELEIYQLKPPDWRLPTQLNRPELGYPGLHPTHPGQHEDAITKSLVQWGFSAQMLVSTESFSAHQMIYKKITDEAAFNVSSSALAALIEARRRYCAINSYDTESTIKVPGRVTLNEQKRENWLRELADSSVPLLKLSKNVPHGFKGEKLLEMLVSRKIDSSRATWYIRLIGLNEINAQRNKNELSHIRYTLSFTSDVCQFLQKQLAEVTVPLQTNLSSSTTSLITTSSRLAAMNVRSKPRSSTLSDPETRKHWVAKWNQSRMLLKRLYFESLLDQPTFFKWLIDQLRLANLAQINFLLEIHHSVLDRFNLSSNLVRGFVEACLFQIRFLERRLKLAVQSAFIFCPDNFVWPDIWISNKVLLEEIILANFPRSTDDISSLKHNSQTNQLREILKGDFYAVNWRVNELIGDVGVGTGIVGNIFRRRVQLVEILDSYTDYNDCSKLYYKYFLNPSVAGHIPVSFKDKLEVLLSWATTPLRTSDKRVHLVASTLSYVKHDYKKNGDEFQNILVGWLEQIESIEGGDLLVRLFSELSRRNIFSYGAYVQRMVAKGETECDIVAGKASGLQALLSEWMPLASSKSSRERSSSIKRSPGRDSARNGLMAIIADFNSAIASADYGRFTSLLKRRLDVRQATSANRKLLAEILPNALVHLVSELTFPSVSGSGFLVSKTANHPQMASALLTWGIQLLEACQAHATLFEIMQRIVQIDLGRLEALRSDERARADLSPSFQSTLHYLQVICMTASNNKEILEINGQLADFISRLFAIYVHFRRLIGGTFPVLRGFVRCLRNLVIESNAVDSQILEVLDKEYHPIFDEMMTGPSTGETLPSRTREILQLIQCPSAAQVSQLVLKYWEEYRSDMDWGAVLWNSLIAAIKIHSQEEFDEPLLKNIGEGVQNPYENWAHFREIIMQFCEDLDVLYEEGLIGCLIRAGYVNYPHPDDEALFSQPVPTSDVKMTSEEEEGEESEEIVMGGPSLKSLFFHNQRSLCRNIRLLLVELMSCGLISIEVGLEEYVIRPLADDVPQLLVNLCGDNSSDTQRASHTTQAEEALRQVKEIYELVNEALCEQQVDRRAFVSQSPGKESVVMMTPSHSRSDGHSSFTNQGTPEVSFKSKDVEHAIEEYVRAWKLHVERKLWFEQSDEGSAFCSRLLLSLLISIKTVSELSFDPDGQENPSSQQQESFEQLITKILDVFESLRGTVCRGSSLLRRQIPAQSAVFLNPILEFVKQNDLGTIFHTKLIHSIDELLPYSQPIDLVNQKYPYLESIFKATCIFNHAARTRQFQLHIRLLMSSNPPQMSASKEASVDLASTLGSLVEVMAKRLHLTDSKDASPFFLECLPAQVAEALIIKLSLYLGMSICKLLGPNPSDSALEVLRIHHISRCITTLTNQLTIRTYQSNDDITSKVVGGSGPLGCNATVESYMSYWQQLKSGLSLLNNRLTTSDPTTLSPKRLEYRIIRALLHSIQVILWSLPGLTQHLGALKQMIAEIWIEIALRVQGDSALQNQIMDTISVLLFPTVPDDSCLTATVGILRKRFRWLYLPILNLDDGSNLVPSNRLKYLLGSSLRGSSTLFQERLADGAVKFVEEKPWEELEKMDLSGPGFISIDALKCQTLSHIEQIPEPKRVVSRPPKSKRGNGDGEETMAEDIEPGGERGSDQQMAGAHALEEEEEENEEEEEIIRGERHCFEHELATDGLSTMPLHFLRSLFPPASRLTGGDWQVTQEQQKLLQTHQAEQTRIQQQQQQQQQQGSSMEVQAEPESGRTRKRKGLGLSPMPVDLATSSSSGPTLRSARSTRKKSSAAAPVNPPPTTASTSKRAKKR
Length1845
PositionKinase
OrganismPuccinia graminis f. sp. tritici (strain CRL 75-36-700-3 / race SCCL) (Black stem rust fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina> Pucciniomycetes> Pucciniales> Pucciniaceae> Puccinia.
Aromaticity0.07
Grand average of hydropathy-0.285
Instability index54.93
Isoelectric point6.11
Molecular weight207921.51
Publications
PubMed=21536894

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26571
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.30|      23|     227|      93|     121|       1
---------------------------------------------------------------------------
   93-  121 (28.62/32.20)	IYKKITDEaaFNVSSSALAALIEArrryC
  326-  348 (41.68/25.44)	IHHSVLDR..FNLSSNLVRGFVEA....C
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.37|      14|      32|     917|     930|       3
---------------------------------------------------------------------------
  917-  930 (28.43/18.24)	IGEGVQNPYENWAH
  951-  964 (27.94/17.78)	IGCLIRAGYVNYPH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.18|      14|      34|    1011|    1024|       5
---------------------------------------------------------------------------
 1011- 1024 (23.78/13.41)	RSLCRNIRLLLVEL
 1042- 1055 (24.41/13.96)	RPLADDVPQLLVNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.85|      12|      75|    1719|    1730|       6
---------------------------------------------------------------------------
 1719- 1730 (23.20/10.97)	GLSTMPLHFLRS
 1795- 1806 (22.64/10.55)	GLSPMPVDLATS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.79|      13|      72|     307|     322|      11
---------------------------------------------------------------------------
  283-  295 (25.18/16.52)	W..NQSRML.LKRLYF
  307-  322 (14.61/20.16)	WliDQLRLAnLAQINF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.56|      21|     701|     966|     998|      12
---------------------------------------------------------------------------
  978-  998 (38.18/39.91)	SDVKMTS......EEEEGEESEEIVMG
 1680- 1706 (32.38/10.93)	SDQQMAGahaleeEEEENEEEEEIIRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     398.55|     134|     701|     717|     888|      13
---------------------------------------------------------------------------
  717-  879 (188.29/186.14)	CqaHATLFEIMQRIVQIDLG.RLEALRSDERARADLSPS......FQSTLHYLQVICMTASNNKEILeinGQLADFISRLFaIYVHFRrlIGGTfpvlrgfvrclrnlviesNAVDSQILEVLDKEYHP.IFDEMMTGPSTGeTLPSRTR....EILQLIQcpSAAQVSQLVLKY
 1439- 1584 (210.26/136.88)	C..NATVESYMSYWQQLKSGlSLLNNRLTTSDPTTLSPKrleyriIRALLHSIQVILWSLPGLTQHL...GALKQMIAEIW.IEIALR..VQGD..................SALQNQIMDTISVLLFPtVPDDSCLTATVG.ILRKRFRwlylPILNLDD..GSNLVPSNRLKY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26571 with Med12 domain of Kingdom Fungi
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