<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26561
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | GGCGPRPPARQRGPRGDPARPPAGEPAALAVGPVACGHAMDLAYVCEWERWPKSTHCPSVPLACAWSCRNLIAFTTDLRNDDQDLTRMIHILASQHPVHTLVSGTHLVPLPCCGLPPTGSRLLSADADGQIKCWSMADHLANSWESHVGSLVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVATADGSSASPVQFYKVCVSVVSEKCRIDTEILPSLFMRCTTDLNRKDKFPAITHLKFLARDMSEQVLLCASSQTSSIVECWSLRKEGLPVNNVFQQISPVVGDKQPMILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGSVHIVHRLSLQSMAVFYSSAAPRAADEPAIKRPRTAGPAVHFKAMQLSWTSLALVGIDNHGKLSMLRISPSMGHTLDVSLALRHLLFLLEYCMVTGYDWWDTLLHVQPGMVQSLVEKLHEEYTRQNAALQQVLSTRILAMKASLCKLSPCTVARVCDYHAKLFLVAVSSTLKSLLRPHFLNTPDKSPGDRLTEVCTKITDADIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLASLPNQGSPLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCRDEGPTSEPDEALVDECCLLPSQLLIPSLDWLPVSDGLVSRLQPKQPLRLHFGKAPTLPTSASTLQLDGLIRAPGQPKIDHLRRLHLGAYPTEECKTCTRCGCVTMLRSPNKTTAVKQWEQRWIKNCVCGGLWRRVPLSYP |
Length | 867 |
Position | Tail |
Organism | Canis lupus familiaris (Dog) (Canis familiaris) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia>
Eutheria> Laurasiatheria> Carnivora> Caniformia> Canidae> Canis.
|
Aromaticity | 0.06 |
Grand average of hydropathy | 0.035 |
Instability index | 48.66 |
Isoelectric point | 8.62 |
Molecular weight | 95064.54 |
Publications | PubMed=16341006
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IBA:GO_Central
|
GO - Biological Function | |
GO - Biological Process | positive regulation of transcription, DNA-templated GO:0045893 IBA:GO_Central
|
Interaction
Repeat regions
Repeats |
>MDP26561
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 70.75| 23| 25| 737| 761| 1
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737- 761 (35.71/26.65) EALVDEccLLPSQ...LLIPSLDWLPVS
762- 787 (35.04/17.61) DGLVSR..LQPKQplrLHFGKAPTLPTS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 75.95| 23| 27| 335| 361| 3
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335- 361 (36.91/33.53) WSLrkegLPVNNVFQQISPVVGDKQPM
365- 387 (39.04/24.70) WRI....LSATNDLDRVSAVALPKLPI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 50.45| 14| 32| 136| 149| 4
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136- 149 (26.93/19.73) MADHLANSWESHVG
169- 182 (23.53/16.24) LALHVEKSGASSFG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 89.02| 26| 33| 664| 691| 5
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664- 689 (46.06/31.69) PLRPGHSFLRDGTSL..GMLRELMVVIR
700- 727 (42.97/21.59) PVYTATSDTQDSMSLlfRLLTKLWICCR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 61.50| 15| 27| 820| 834| 8
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820- 834 (30.13/16.69) ECKTCTRCGCVTMLR
846- 860 (31.37/17.66) EQRWIKNCVCGGLWR
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