<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26547

Description Uncharacterized protein (Fragment)
SequenceFVNISQGYLNETDALMMSHVQRLSLTIPDTFVSPKLWSGYADLIADILVTEITDNTQDEMAENGTHYLSQHMVFNLADIKKRNETMLFRNLPDVSSVRLGSAVSDVEVRFQIYISQDNSHALQQMLNSITTDTDVATLPFFPVVSEDWSGMPEKLTTLLTWSVTPLQFGDHRPFVAVTLIRHWRLKAGERANRRDVMPPDELLQDRLFEWLDSAEVSKDTQNIRTIALLYGELVKHHLFSYTRYLQRLIARGEPGLSFAEAQDIFAVDSLIQHPVFGD
Length278
PositionKinase
OrganismMoniliophthora perniciosa (strain FA553 / isolate CP02) (Witches'-broom disease fungus) (Marasmius perniciosus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Agaricomycetidae> Agaricales> Marasmiaceae> Moniliophthora.
Aromaticity0.09
Grand average of hydropathy-0.169
Instability index39.73
Isoelectric point4.99
Molecular weight31714.57
Publications
PubMed=19019209

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26547
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.87|      28|     108|      26|      53|       1
---------------------------------------------------------------------------
   26-   53 (48.47/31.32)	TIPDTFVSPKLWSGYADLIADILVTEIT
  137-  164 (51.41/33.60)	TLPFFPVVSEDWSGMPEKLTTLLTWSVT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.37|      10|      25|      99|     108|       4
---------------------------------------------------------------------------
   99-  108 (15.75/10.82)	LGSAVSDVEV
  126-  135 (16.62/11.79)	LNSITTDTDV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26547 with Med12 domain of Kingdom Fungi
Unable to open file!