<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26491

Description Mediator of RNA polymerase II transcription subunit 30
SequenceMAGQQHPFLSGFPNVQQSAMRTQFGGGQMVSGLIGPQQGNMVSSQQFGMGVGVGNNQTSNQATTPQTPVPPTQPPMQQQQTKEVNTASLCRCGQETVQEIVNRTSELFQFLKMLQPPNGTAQGANMANEKKIKIFEQLKIIKMMFKRLRIIYEKCNENCQLQGMEYTHIESLIPLKEEWDMKSDEKKTSEAYRLICEESKEVIEQVVLKNRHIKEIIDHLRRIISEINTMLNMRRS
Length236
PositionHead
OrganismCamponotus floridanus (Florida carpenter ant)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Hymenoptera> Apocrita> Aculeata> Formicoidea> Formicidae> Formicinae> Camponotus.
Aromaticity0.05
Grand average of hydropathy-0.590
Instability index51.52
Isoelectric point8.79
Molecular weight26844.66
Publications
PubMed=20798317

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26491
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      97.42|      19|      39|       4|      22|       1
---------------------------------------------------------------------------
    4-   22 (35.62/18.06)	QQHPFLSGFPNVQQSAMRT
   28-   43 (28.28/13.16)	Q...MVSGLIGPQQGNMVS
   45-   63 (33.53/16.66)	QQFGMGVGVGNNQTSNQAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.19|      25|      41|     149|     173|       2
---------------------------------------------------------------------------
  149-  173 (45.00/25.79)	RIIYEKCNENCQLQGMEYTHIESLI
  193-  217 (40.19/22.44)	RLICEESKEVIEQVVLKNRHIKEII
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26491 with Med30 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MAGQQHPFLSGFPNVQQSAMRTQFGGGQMVSGLIGPQQG
2) SQQFGMGVGVGNNQTSNQATTPQTPVPPTQPPMQQQQTKEVN
1
44
39
85










Molecular Recognition Features






MoRF SequenceStartStop




NANANA