<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26487

Description Mediator of RNA polymerase II transcription subunit 25
SequenceMSMAAQPTHSQPGSQLTVSCISQSVPTQVSQTVTASQQAPVSVSSITQQITHPQTQGTVSTGTVQGGSRERHNIWHGIVEWIEKAKNPTDAQKQTRHVPCHVSANLKDGEPELKADTWPQKLIMQLMPKQLIGNIGGSYLKNSKSVLFHPTPCEALESLTKMMSTGFAGCVHFTSAPTSPTCEIKVLILLYTAEKKTYLGFIPNDQTGFVDRLRKVIQQQKTSHASLRQGQANPGPGNTIPAPMPTTGTQGGILMSQTNTMAMGGGQITQNVVCTNAPPQTLTSTTGPQNQMNMQNSGISGPQANTGAGGMIGQQRPPFDDIEMARHQNLLKIQHLRQTLEDAQRQEAQYKSQLEAQQAQRSLNPAAMSNQQANAQRLMRPVSANNLGLRHLLQQPQPQYRQVFGVQQQMVGPRGQITARPMAPGNTQNQQFEDVSNYDFLG
Length442
PositionUnknown
OrganismCamponotus floridanus (Florida carpenter ant)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Hymenoptera> Apocrita> Aculeata> Formicoidea> Formicidae> Formicinae> Camponotus.
Aromaticity0.04
Grand average of hydropathy-0.577
Instability index47.79
Isoelectric point9.40
Molecular weight48068.82
Publications
PubMed=20798317

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26487
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     216.59|      49|      55|     324|     376|       1
---------------------------------------------------------------------------
  270-  315 (61.47/21.20)	......QNVVCTNAPPQTLTSTtgpQNQMNMQNSGISGPQA.....NTGAGGMIGQQ
  324-  372 (80.65/36.88)	MAR..HQNLLKIQHLRQTLEDA...QRQEAQYKSQLEAQQAQ...RSLNPAAMSNQQ
  378-  431 (74.47/27.67)	LMRpvSANNLGLRHLLQQPQPQ...YRQVFGVQQQMVGPRGQitaRPMAPGNTQNQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.51|      12|      15|      31|      42|       2
---------------------------------------------------------------------------
   31-   42 (20.90/10.90)	QTVTASQ.QAPVS
   48-   60 (18.61/ 8.84)	QQITHPQtQGTVS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26487 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GGQITQNVVCTNAPPQTLTSTTGPQNQMNMQNSGISGPQANTGAGGMIGQQRPPFDDIEMARHQNLLKIQHLRQTLEDAQRQEAQYKSQLEAQQAQRSLNPAAMSNQQANAQRLMRPVSANNLGLRHLLQ
2) PVSVSSITQQITHPQTQGTVSTGTVQGGSRE
3) QQQKTSHASLRQGQANPGPGNTIPAPMPTTGTQGGILMSQTNTM
265
40
218
394
70
261










Molecular Recognition Features






MoRF SequenceStartStop




NANANA