<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26484

Description XK-related protein
SequenceMHNINRERSNATWIALVLQALWRGGMLLSRIGVLVLAAVFLRTWFFLFLGLHWLFMTIWVILQKTEFCPTMWEERIYNCIIGLIYCFDFFNLREGRSRYRVLVFYTVIVAQNLILLTMYTLHFKDTIANDTMIAIASVIIGGMLVGLTSMSLYYGKFHPSKMMMTNGISRNINEHSHATNTVKTETPSKSFKLFHRGSLVSLHHSIDISPRTEEGEVATDKQSLLTNIAQISDCAEEGIVNRNYNSENESNASVVRVSTECERSHSRIGGKHKEEIASNDNPDNALTGSSAPLYPGLLDIDSSRKRHGIYEHDITPQLDWHAPDILNIDLLDQLSKLDNSERNNSLSFNSCSSKVIGALDVIKNRGKLTTPTPLESSRIFDIEKQQRDETMSCVTSIHDYENVCPLGIARPPWCIRSWKGYTDIETYIHDDSVVRDRRRDTLTSTTGTTYSSEYSDGMISRGILKQDDYADALTYDLVESKEESKSAYGDNAFSTSAVGNQSASLYVAKPVVIDDRGGMLALDTILEERDDSSDEKFPHTIEPSRDSASTLVSTIDQIRRYTAENSPRHIYHITETQWEDLNPKNLMARARFAQVLFDSDLKNTSTTVDPVDLTARDVEKREIDAIREFVRCCAIESIKKTPLIDAILSDSPVLGSRANKLVRQVTFADRKNDFDANESDLYVEMSPLVSVENGENPCQTRLAENTIETEISTKRNNSTISEKSPDKENLAPIASNNNIRRINNMMYDNSDSCDRRAWTIERDDKNDKSFCSVHFNLKEKRHLFLEQVLSPVPKLWNKPGQSSTGAAPTSSDKGKEWQMELLMEKLRSKASTFKPLVETAKNMRMAMDKRFAIDSIERNQLQKCLDTLQHSIKVTSFQSMVERLESLARQLGLKFMMSGPPGTEIFISSDMFFLEVLLEPSGLVRDVKIHHEGKSEQQSCEALASALSRGDFVDFTTQLEGLASIYQLNADKKVKCKAFSALQSLEADLGVLAQLQTFMKEPFNLVHKSPVGILERRRGGHPMKLTYFVSPYDLIDEENRTYDALNPDVIIKRKIGHSVTVCMEGSVGHKLPTSSIITVNRSSTGKSTPSYAPLTSTNSSMLPACFVLKLGKKMPICMELVRRIQKVTELECGDISAPHPMLSLIIQHASDGQLDCRNNRGLYVTLPDQQHCYFMTENKNMEGVLVCSVPFTHPAHVPQILVYLRQQALFNCLIASCVRPMARQDPEHTTILEVSALSWQHISVSVEHPYEETMATAELDLTDISALKCRLYGVSMTTNAEQTSDLSGRVLQRCLSIPLTMRMLLKIWEGRSLPAVMNNLTGGSSSGNGSYNLNLGSGANNTTASMLNPLQLGALLGQAKNSLTGNSNSNERGKKTRKRKTGTDGMWRSPKRKGDGGSVDSGAGAEILLESSSSENSTPLGTPTGGRENLTSETRTSTPTSAISLASGMDFSNLDTTDIIGTDKSASDYDLDNSERDSEVVEVQQNNAEQQQQEIEELTKTRESSSTRKSKKSRSSGGSEEKKSSPTNIFVDETSTNTNNSNKSLPVPPSVSITPISCGNLDQASATNYNSVLTGMGLERRPGIEIIPITSSPSQTSLPSSITITPITGPAPSPKTGGLTTSATEERQRSERKSGGKSSGSSSSGKSSSEDNNKSGANKLEKRRKRKREDSPMGPPDKVPSGGKQQQDPLSKPVSVTIKPSTEQSPPSSGGLSCPSSRPTSPAAVRKFSPSPTHPSSLATLVGKSSPTLKASQSAAGVACGGKSVQSPKHSPVYSSSPKHNTPNVVPVVPMSVPMSLSVSTIPNTIPSVAVSVPVPANASPKHGSISSPKHGSSAASSGKPSMSALKSAANSPSSKSSSSSDATATPSKIKSSSSSSSGKDSSGRGDKERRASSVGSSGGSASGHQSPKTKSSSSSVKLKQLEMIPPGEAAQVSSLSAGNSGGNTPPSGQGDAASKSAIAAQQARNRKSSLNAVIDKLKNAQHCTEPDGCGNGSGSNAKSSASTSLGGNGGISGQKEKSISGGSSSGTKNVEGGKSSCVTKNSADTKNPEYMVKHSSDGIKITINKTRTKDSKQSAANQKLSSSSSSSSATMAAPTSSSGTSSSSMASSLSLSSSGNVISGSNGSPKTHTGLKPGVNSGPASKKPQTLQTPQKLLPTKMMLATGGLKSSTSSVMNTGSGTSMSGVTTSGGNPLSKSGSSSKTGSPKTGGSMATDLSRGRDKPRIPKSDKGVFASKSLGDARKSSPSALREESDSERAFKLLAAHASNLPPSLPPQLVMEGLMKQLDTKFQIPKLSARANVADGADKKSSDKLAMLPDSAKQTLDGLKQESGKLAGLSNVPTSKSSLPDDQSRRDHPQTKPDNLSIGTTAAGAMSLNLIGENASGLMLPPQTAVDSDVPTNLCIQPMMDNDSSRNESCKELGIRQTSTGQQYLLGKIDDASGNGGGILSKSNIPDQLASSAKSYTPSSSVSAASSSGSSIVAESLNLSTKSFEQMTQVKYNKIAEEKKPQQTTCGASSSSSSSSSSIFSSLSGVATSSDDNPNVVMTSGSDGSGEQEATAAAEMLLDFSAANKDPMTKGGHGIPSSLTHLTTIPERAIPSVSVHIVKSPAPSPRVIPPSPHSSASPCITDDELMDEALVGMGK
Length2642
PositionMiddle
OrganismCamponotus floridanus (Florida carpenter ant)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Hymenoptera> Apocrita> Aculeata> Formicoidea> Formicidae> Formicinae> Camponotus.
Aromaticity0.04
Grand average of hydropathy-0.494
Instability index53.29
Isoelectric point8.58
Molecular weight283134.50
Publications
PubMed=20798317

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-UniRule
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26484
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.50|      17|      17|    1778|    1794|       1
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 1778- 1794 (34.62/22.60)	PKHNTPNVVPVVPMSVP
 1798- 1814 (28.89/17.39)	SVSTIPNTIPSVAVSVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.76|      17|      17|    1869|    1885|       2
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 1635- 1651 (24.45/ 6.68)	GGKSSGSSSSGKSSSED
 1869- 1885 (26.31/ 7.88)	KIKSSSSSSSGKDSSGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     104.73|      12|      17|    1582|    1593|       8
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 1549- 1560 (23.02/12.65)	P.SVSITPISCGN
 1582- 1593 (22.73/12.37)	P.GIEIIPITSSP
 1599- 1610 (18.54/ 8.26)	PsSITITPIT.GP
 2598- 2608 (19.73/ 9.43)	P.SVSV.HIVKSP
 2610- 2619 (20.71/10.38)	P.SPRVIP..PSP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     356.53|      77|     295|    1897|    1978|       9
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 1323- 1385 (70.77/34.72)	GSSSGNGSYNLNlgSGANNTTASMLNPLQLGAlLGQA...KNSLTGNS..NSNERGKKTRKRK.......T............................................................gTDG
 1386- 1463 (76.50/38.31)	....MWRSPKRK..GDGGSV........DSGA.GAEIlleSSSSENSTPLGTPTGGRENLTSEtrtstptSAISLASGMDF.SNL....DTT.....................................diiGTD
 1464- 1517 (65.76/31.58)	KSASDYDLDNSE..RDSEVVEVQQNN..AEQQ.QQEI...EELTKTRESSSTRKSKK....SR.......S..............................................................SG
 1824- 1899 (39.13/14.89)	GSIS...SPKHG..SSAAS..........SGK.P.......SMSALKSAANSPSSK....................................sssssdatatpskiksssssssgkdssgrgdkerrassvgSSG
 1900- 1978 (104.38/67.16)	GSASGHQSPKTK..SSSSSVKLKQLEMIPPGE.AAQV...SSLSAGNSGGNTPPSGQGDAASK.......SAIAAQQARNRkSSLnaviDKL...........................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     756.71|     246|     295|     148|     409|      10
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  148-  409 (379.86/251.68)	TSMSLYYGKFhpSKMMMTNGISRNiNEHSHAT..NTVKTETPSKSF...KLFHRGSLVSLHHSIDISprteEGEVATDKQSLL...TNIAQISDCAEEGIVNRNYNSEnESNASVVRVSTECERSHSRIGGKHKEEIASND....NPDNALtgSSAPLYPGLLDIDSSRKRHGIYEHDITPQlDWHAPDILNIDLLDQLSKLDNSERNNSLSFNSCSSKVIGAldvikNRGKLTTPTPLESSRI.FDIEKQQRDETMSCVTSIHDYENVCPLGIA
  445-  703 (376.85/212.15)	TTGTTYSSEY..SDGMISRGILKQ.DDYADALtyDLVESKEESKSAygdNAFSTSAVGNQSASLYVA....KPVVIDDRGGMLaldTILEERDDSSDEKFPHTIEPSR.DSASTLVSTIDQIRRYTAENSPRHIYHITETQwedlNPKNLM..ARARFAQVLFDSDLKNTSTTVDPVDLTAR.DVEKREIDAIREFVRCCAIESIKKTPLIDAILSDSPVLGS.....RANKLVRQVTFADRKNdFDANESDLYVEMSPLVSVENGENPCQTRLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     524.46|     118|     431|    2036|    2169|      11
---------------------------------------------------------------------------
 2036- 2143 (126.93/55.18)	..........................SSCVTKNSADTKNPEYMVKHSS............DGI......KITINKTRTKDS...........KQSAANQK................LSSSSssssatmaaptsssgtSSSS.MASS..............L.S..LSSSG...NV.I..SGSNGS.....................PKTHTGLKPGVNSGPASK
 2144- 2220 (86.52/34.24)	KPQTLQTPQKLLPTKMMLATGGLKS................................................................................................................STSSvMNT.gsgtsmsgvttsggN.P..LSKSG...S.....SSKTGS.....................PKTGGSMATDLSRG..RD
 2221- 2343 (130.40/55.85)	KPRIPKSDKGVFASKS.LGDAR.KSSPSALREESDSERAFKLLAAHASnlppslppqlvmEGLmkqldtKFQIPKLSARAN...........VADGADKK.....................................SSDK.LA................M.L..PDSAK...QT.L..DGL.........................KQESGKLAGLSNVPTSK
 2355- 2485 (115.32/48.43)	HPQT..KPDNL..SIGTTAAGAM..SLNLIGENASGLMLPPQTAVDSD............VPT......NLCIQPMMDNDSsrnesckelgiRQTSTGQQyllgkiddasgngggiLSKSN................IPDQ.LASS..............AkS..YTPSS...SVsA..ASSSGS.....................SIVAESLN..........
 2487- 2585 (65.29/23.78)	...................................STKSFEQMTQVKY............N........KI....AEEKKP...........QQTTCGAS................SSSSS................SSSS.IFSS..............L.SgvATSSDdnpNV.VmtSGSDGSgeqeataaaemlldfsaankdPMTKGG..HGI...PSS.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.27|      13|      16|    1667|    1679|      15
---------------------------------------------------------------------------
 1667- 1679 (24.87/13.58)	KREDSPMGPPDKV
 1684- 1696 (22.41/11.32)	KQQQDPLSKPVSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.02|      16|      19|    1066|    1083|      16
---------------------------------------------------------------------------
 1068- 1083 (27.20/18.72)	GHKLPTSSIITVNRSS
 1085- 1100 (27.82/11.83)	GKSTPSYAPLTSTNSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.22|      16|      21|    1250|    1265|      18
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 1250- 1265 (26.25/16.71)	YEETMATAELDLTDIS
 1272- 1287 (25.97/16.44)	YGVSMTTNAEQTSDLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.93|      16|     817|     710|     725|      21
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  710-  725 (27.93/15.16)	EISTKRNNSTISEKSP
 1533- 1548 (29.00/16.07)	ETSTNTNNSNKSLPVP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26484 with Med1 domain of Kingdom Metazoa
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