<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26478
Description |
Mediator of RNA polymerase II transcription subunit 13 (Fragment) |
Sequence | EQGSWESGLSYECRSLLFKALHNLIERCLLSRDFVRLGKWFVQPYNGYEKHRCSSSHLSFSFAFFVHGESTVCASVDVRQHPAVRHLTKTCLQRTQTSQSGVKVILAPYGLAGTLTGQVSRMDSQLLEEWKHFYPISTGSNPETGLPPLVEVLVGGVRMRYPSCYVLVTDMDDTPPETPLSPPSSPVACERPLLTQQELSAATELPERVWAECTLSSPVSASKTESSTEPETWTFVEPTQKSSCTCSCSKYTTPGGWKSLASSQIQRERVDKGGRRVVPFHRRSTTQWDTCPSVPANAPRSVLSRTEAPSTPPGGPPSYSRGPPTGGDCLPVPSVGSPGSPAPSPLLTPHSEPASVPPAEPTMPTLSPQPPPSHTNTAPPLTPSQGPKSISSACNNQVHSPSVPGPILKRPVLASREYEGALLDDEQPLSWLYDYSLQEAWLNHPVKRFKATNTAGPPINRSNILYPPINSQTLQASQAPKLEIKQEPVSVAECIGRRTDPYEFDATGEENGTNVDGLRRQRDDPSKPGSLFTSEGLQPSYKDLDQIFDNSDADTSSDETNLNQLQIQTPPGSNKSGGLHEETRIDGTNKNNNRGVTVLRPEELSKMFPTPPSLEHNPVASPCQLSDPLIDQTELLMPTRPLRHLPDIYPNMGSPQEEPIDDWSYVFKPAAICKMVGSSNPAPPYRSATLPGRPPPPPYDQPSPATSTTSSYLNKNLNSIEADTPGPARAPESNSLIVNILLGDTALNIFRDHNFDSCSLCVCNAGPKVVGNIKGADAGVYLSNSWAGSALFQDDDPIRCSCGFSAVVNRRLAHRAGLFYEDEMEITGVAEDPAEKKKGSLATAACPGAKATPDGLDIISPNVLELLREQCLIVQSSASSLYRAARICATTKSYPTLTPTVNTLEFNDGNEVCVAALDQGKLDGAHNERVVRVNGVHRWVFLRARGPQCSGDIVRMMRSLQPLLQDAVQKKCTTRMWEAPYTVAGPLTWRQFHRLAGRGTDDRCEPQPIPALVVGYDRDWLSLSPYAICFWEKLSLEPFAGPRDVAYVVVAPDSDCIINRVKSFFRELSCTYEICRLGRHTPISKQLRDGILRVGKSTAQKLAKQPMDEWFKFLGENHLGELLRLYAQVCNHRLAPYLTQVIQDRSLLDPADLQSSNKQQQQSTIPVPDTMPATPDVLTTTKPESVEGENPRSETPSSTSTATNQTATTTGNTTPTSQTTNSTTPITTTTGPDEEEIEPPAIVVYFVEPFSLGGTEDPDRRRLAILALLRAYSSAINSMPENMRSNIHVQIISLESIMELGRARERRKIQDEMRALALNVFLQGRRLLNHNSTVKSLTGFGTAAAADLFLKSKDSFSNTLATIHQERNKAPYRLYAPAFVLAPLRAKSEAPESFGMARPEECAVLYLSYCLSEDQSWLLAAATDDRGEIFETATINIDIPNRKRRKRASARRIGLQKLMDFILSIMSQGVQPWRLVVGRVGRIGHGELKGWSWLLSRKALLKASKHLKEICGQCSLLYPSAAPCVLSACLVSLEPDSTLRLMADQFTPDERFSQASVNCQLSTPQDVTCTHILVFPTSATTQSSQTAFQEQHNVPELGDDELFSALNDDMPEGMEGMGDFNDIFNVWPEPGAGGGQSPNGSPHRPEGSPHGGDGGGSGLGNHDGPGSPFPCSNTPRIAIAEQTEEVGTLLQQPLALGYLVSTAPTGRMPPWFWAACPHLENVCPVFLKNALHLHSPAIQQNSDDLLQQQSAPTAHPYVLEGYNALSWLALDANTKDRLSCLPVHVQALMHLYHATAALV |
Length | 1799 |
Position | Middle |
Organism | Camponotus floridanus (Florida carpenter ant) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota>
Neoptera> Endopterygota> Hymenoptera> Apocrita> Aculeata> Formicoidea>
Formicidae> Formicinae> Camponotus.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.408 |
Instability index | 59.87 |
Isoelectric point | 5.86 |
Molecular weight | 196575.50 |
Publications | PubMed=20798317
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP26478
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 175.03| 38| 39| 279| 316| 1
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211- 288 (30.77/ 7.19) AECTlSSPVSASKT.ESSTEpetwtfveptqkssctcscSKYTTPGGWkslassqiqrervdkggrrvvP.FHRRSTTQW
289- 327 (69.93/26.41) DTCP.SVPANAPRSVLSRTE...................APSTPPGGP.....................PsYSRGPPTGG
673- 704 (40.20/11.82) ..CK.MVGSSNPAPPYRSAT...................LPGRPP..P.....................PpYDQPSP...
1628- 1652 (34.14/ 8.84) ...........PEPGAGGGQ...................SPNGSPHRP.....................E....GSPHGG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 98.45| 33| 39| 835| 871| 2
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835- 871 (53.01/30.18) EKKKGSLATAA..CPGAKATPDgldiISP..NVLEL..LREQC
875- 913 (45.44/18.85) QSSASSLYRAAriCATTKSYPT....LTPtvNTLEFndGNEVC
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 337.19| 102| 170| 358| 467| 3
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364- 467 (176.52/88.91) PTLSPQPPPSHTNTAPPLTPSQGPKSISSACNNQVHSPSVPGPILKRPVLASREYEGALLDDEQPLSWLYDYSLQEAW.....LNH.PVKrfKATNTAGPPINRSNILYP
531- 638 (160.67/81.05) LFTSEGLQPSYKDLDQIFDNSDADTSSDETNLNQLQIQTPPGSNKSGGLHEETRIDGTNKNNNRGVTVLRPEELSKMFptppsLEHnPVA..SPCQLSDPLIDQTELLMP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 234.00| 68| 391| 919| 1021| 4
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65- 136 (113.98/66.25) FVHGESTVCASVDVRQHPAVRHLTKTCLQRTQTSqsgvKVILAPYGLAGTLT.GQVSRMDSQLLEEWKHFYPI
941- 1009 (120.02/100.67) FLRARGPQCSGDIVRMMRSLQPLLQDAVQKKCTT....RMWEAPYTVAGPLTwRQFHRLAGRGTDDRCEPQPI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 57.41| 16| 21| 1191| 1206| 5
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1191- 1206 (28.60/14.23) PRSETPSSTSTATNQT
1215- 1230 (28.81/14.38) PTSQTTNSTTPITTTT
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 284.86| 89| 585| 1078| 1178| 8
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1078- 1178 (134.35/117.53) GRHTPISKQLRdgiLRVGKSTAQ..KLAKQPMDEWFkFLGENHLGELLRLYAQVCNH..RLAP.YLTQVIQdrsLLDPADLQSSNKQQQQSTIPVpdtmpATPDVL
1666- 1759 (150.51/97.19) GSPFPCSNTPR...IAIAEQTEEvgTLLQQPLALGY.LVSTAPTGRMPPWFWAACPHleNVCPvFLKNALH...LHSPAIQQNSDDLLQQQSAPT.....AHPYVL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 54.62| 17| 37| 763| 781| 9
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763- 781 (27.45/23.58) CnaGPKVVGNIKGAD.AGVY
802- 819 (27.17/16.06) C..GFSAVVNRRLAHrAGLF
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