<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26449

Description "CRSP complex subunit, putative"
SequenceMSTTETQITNIVNEILKVEGMEEAFSCFLVHRPDFENEKMEQFRSELQIALNNVVPEQQEAGVRQFLLLAANMTNPSRLQFLLQLLEGAVQSNIVSARLVCECILSCDKLSLNNQDFWVQCFQLMRKIIVGVDYKGVREIMKGCREKAAVIPAKLNAAQMPQITALESVMEFIFDRNACLLPAYFIVNEIQKAYPENKNWPHWKLANLLSGFVESFRPCAQMVSIVGHSKLLPVVEHSGYADHLSPWKLDPTTLKFTLKGILPYDRELSEPQTGLLRYVLEQPYSRDMVCCMLGLVKQHKQRCVALEEQLVALVVVAMERSETETGDSSHWLWLHLSSQLIYFVLFQFASFPNIVMALHDKLSGRDLKKGRDHLMWVLLQFISGSIQRNPLSNFLPVLKLYDLLYPEKEPLPVPDVNKAVCTHQMAMTCIWIHLLKKAQADHLNIQRPIPLTLKIHHEFLQHLVQPNNSLGLCMGADYRIALLCNAYSTNQEYFTRPMAALVETILGAQKSSSLPPGPTTPLSMAILDSLTVHSKMSLIHSIVTHVVKQAQSKSILALAPALVETYSRLLVYTEIESLGIKGFISHLLPTVFKHHAWGILYTLLEMFSYRMHHIQPHYRVQLLSHLHSLAAVPQTNQTQLHLCVESTALRLITGLGSAEVQPQLSRFLNEPKTLVSAESEELNRALVLTLARSMHVTGTGSDSISGTWCKELLSTIMQNTPHSWANHTLQCFPLALHDFFQHSPVQKENKPQLKKAVEEEYRNWASMNNENDIIAHFSVAGTPPLFICLLWKMILETDRITSIAYKILERIGARALSAHLRKFCDYLVFEFANSRGEQHVNKCVDALNDMIWKYNIVTIDRLVLCLALRTQEGSEAQVCFFIIQLLLLKAAELRNRVQDFVKENSPEHWKQSNWHEKHLAFHRKYPEKFAPEGILEQSGGASSPYHSLPVYFGNVCLRFLPVFDIVIHRYLELPPVTKSLETLLEHLGCLYKFHDRPVTYLYNTLHYYDRNLRDRPVLKRRLVAAILGALKDIRPPGWSLSEAYINYMSGSGDEVSWLPDLDYYIKLIRRIVETMNGSKAHFPSTDWRFNEFPNPAAHALYVTCVELMAVPVSPSVVANNLLDVVTKGYSVIPWDQIHLWINSIGLVLAALPESYWSIVDDRLIEVMTCSRMTNWPYHNSAFQIFNFSVTHESLLENKFSYILALAHAMWYHAGVGQISTLPVFVKEKAKTVIKTEEQFLFLCHLVGPFLQRLNAERPRCVLELTIELYELLEQVDKSVLQLKYMDPICDLLYHIKYMFVGDMMKNEVETIIRRLRPALQMRLRFIAHLNIEEIHAQVRNILISLNKMDSKKKKKEVSKQILNFTLENTVN
Length1371
PositionTail
OrganismPediculus humanus subsp. corporis (Body louse)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Paraneoptera> Psocodea> Phthiraptera> Anoplura> Pediculidae> Pediculus.
Aromaticity0.09
Grand average of hydropathy-0.014
Instability index46.39
Isoelectric point7.46
Molecular weight157069.07
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26449
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.97|      11|      35|     335|     350|       1
---------------------------------------------------------------------------
  335-  350 (16.13/19.15)	HLssqliYFVLFQFAS
  373-  383 (22.84/12.56)	HL.....MWVLLQFIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     262.29|      74|     518|     445|     525|       2
---------------------------------------------------------------------------
  205-  245 (40.77/16.14)	......................................LANLLSGFVESF.RPCA...QMV.SIVG..HSKLLPvvehSGYADHLS
  251-  326 (89.94/50.83)	PTTLKFTLKgilpYDRELSEPQTGlLRYVLEQPYSRDMVCCMLGLVKQHKQRCVAleeQLVALVVVAMERSETE....TG......
  450-  523 (131.59/94.40)	PLTLKIHHE....FLQHLVQPNNS.LGLCMGADYRIALLCNAYSTNQEYFTRPMA...ALVETILGAQKSSSLP....PGPTTPLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     350.55|     112|     259|     877|    1034|       3
---------------------------------------------------------------------------
  913- 1034 (184.38/172.10)	NWHEKHLAFhRKYPEKFAPEGILEQS.GGASSPYHSLpVYFGNVC.LRFLPVF.....DIVIHRYLELppvtksleTLLEHL.G.CLYKF.HDRPVTYLYNTLHYYD.RNLRDRPVLKRRLVAAILGALKDIR
 1174- 1296 (166.17/85.23)	NWPYHNSAF.QIFNFSVTHESLLENKfSYILALAHAM.WYHAGVGqISTLPVFvkekaKTVIKTEEQF........LFLCHLvGpFLQRLnAERPRCVLELTIELYElLEQVDKSVLQLKYMDPICDLLYHIK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.57|      25|      37|      19|      43|       4
---------------------------------------------------------------------------
   19-   43 (45.68/30.20)	EGMEEAFSCFLVHRPDFENEKMEQF
   57-   81 (41.89/27.07)	EQQEAGVRQFLLLAANMTNPSRLQF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.34|      20|      38|    1093|    1113|       6
---------------------------------------------------------------------------
 1093- 1113 (32.58/29.04)	PNPAAHaLYVTCVELM..AVPVS
 1133- 1154 (33.76/24.36)	PWDQIH.LWINSIGLVlaALPES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.25|      30|      35|     645|     676|      10
---------------------------------------------------------------------------
  621-  643 (30.70/17.07)	.....Q..L.........LSHLHSLAAVPQ....TNQTQLHLC
  645-  676 (43.55/34.78)	ESTALR..L.........ITGLGSAEVQPQLSrfLNEPKTLVS
  678-  714 (30.99/17.31)	ESEELNraLvltlarsmhVTGTGSDSISGTWC......KELLS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26449 with Med23 domain of Kingdom Metazoa
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