<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26440

Description "Transcription factor, putative"
SequenceMVVGLNDHTVQADIVFVIEGTAINGAYLNDLKTNYLLPTLEYFSQGNLEDRDYVCEGTSTLYGLVVYHAADILPKSSCDCYGPYSSPQKLLMTLDKLELIGGKGESHANIAEGLATALQAFEDLQQKREGNNIITQKHCILVCNSPPYFMPVMEASTYSGHTIDQLAAILNEQNINLSILSPRKIPAIFKLFEKAGGDLTQSQNKNYAKDPRHLVLLKGFSLKERPLSPTSGNTNNLPIPSLPSPLPNDGSPMPNMNQLMPGQQHPAPPGYRPTQAAQVLSQQQMQVQAQQVQQGQIPGRPTFQPAGPPGYAGIRTQGARWPVNFPGPLAQQRTFLNAQAGPGGPGQGSALIAQLTQPPSSQFPSQRMDGPVLSHQMIPQQQQQQIRMSGMTINSQTGQIGHGPIGSVSLGSQGVMGQGIGPQNTIVQQPPMTQAELVLIVLIMYACKFQTAMGAPGGMMPPGLINQNMQNQGQGMPGPGAQQLQGAVSSSIQTNQTGPPPTFQSQPGQVMGPAGNQGIQTATAIGMPSTQTTVMTGPVPTSQNTTGQQTQPPTSQQQTGVSQVGPGTGVPVRERHTIWQGVLEWIEKGKNPNDNQKVTKHVPCQVSSTPKEGEPDLKADSWPQKLIMQLMPKQLIGNIGGAYLKNSTSVLFHPQPCEALDSLTKVMSSGFAGCVHFTSAPTAPACDIKVLILLYTVEKRAYLGFIPNDQVAFVDRLRKVIQHQKSTQALMRQNQVGAAGNSPNSAVQTPPISAPGTAANQPGIMMSQTNTMAMGGGQITQAADGHLGGVQGLGPNPGQGRGGPIMGGPTQRPPFNQLEAARQQNLAKIQQLQQTLEAAQQQEMQYKSQLEIINHMKIQQIQQNLEQAQQQEVHYQAQQAQMEVNF
Length886
PositionUnknown
OrganismPediculus humanus subsp. corporis (Body louse)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Paraneoptera> Psocodea> Phthiraptera> Anoplura> Pediculidae> Pediculus.
Aromaticity0.05
Grand average of hydropathy-0.415
Instability index44.78
Isoelectric point8.20
Molecular weight95034.93
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26440
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     117.40|      25|      26|     825|     849|       1
---------------------------------------------------------------------------
  275-  290 (21.56/ 8.03)	......QAAQVLS...QQQMQVQAQ
  825-  849 (46.93/27.16)	NLAKIQQLQQTLEAAQQQEMQYKSQ
  854-  878 (48.91/28.65)	NHMKIQQIQQNLEQAQQQEVHYQAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     122.65|      25|      25|     510|     534|       2
---------------------------------------------------------------------------
  478-  501 (29.77/ 7.98)	GPGAQQ....LQ..G.AVSSSIQTNQTGPPP
  502-  528 (34.35/10.51)	TFQS..qpgqVM..GPAGNQGIQTATAIGMP
  529-  553 (28.25/ 7.14)	STQTTV......mtGPVPTSQNTTGQQTQPP
  796-  814 (30.29/ 8.27)	NPGQGR....G...GP.....IMGGPTQRPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.85|      17|      25|     228|     245|       3
---------------------------------------------------------------------------
  228-  245 (28.86/13.09)	SPTSgNTNNL.PIPSLPSP
  251-  268 (32.00/11.17)	SPMP.NMNQLmPGQQHPAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     139.89|      27|      27|     344|     370|       4
---------------------------------------------------------------------------
  298-  318 (34.31/13.34)	.PGR.PT...FQPAGPPG..YAGIRTQG
  344-  369 (44.18/19.84)	GPGQ.GSALIAQLTQPPSSQFPSQRMD.
  370-  390 (36.95/15.08)	GP.....VLSHQMI..PQQQQQQIRMSG
  396-  414 (24.44/ 6.84)	QTGQiGHGPIG......SVSLGSQ...G
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.06|      16|      24|     650|     667|       5
---------------------------------------------------------------------------
  650-  667 (26.49/22.65)	VLFHPQP.CEALDslTKVM
  675-  691 (25.57/14.75)	VHFTSAPtAPACD..IKVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     140.51|      42|     317|     416|     477|       6
---------------------------------------------------------------------------
  419-  475 (69.01/51.62)	GIGPqNTIVQQPPMTQAElvlivlimyackfqTAMGAPGGMMPP........GLINQNMQNQGQG
  740-  789 (71.50/29.46)	GNSP.NSAVQTPPISAPG..............TAANQPGIMMSQtntmamggGQITQAADGHLGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.57|      12|     223|     331|     343|       7
---------------------------------------------------------------------------
  331-  343 (19.54/11.55)	QQRTFLnAQAGPG
  556-  567 (24.04/10.23)	QQQTGV.SQVGPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      58.37|      12|      30|     570|     581|       9
---------------------------------------------------------------------------
  570-  581 (21.37/10.41)	VPVRERHTIWQG
  591-  601 (16.80/ 6.72)	NP.NDNQKVTKH
  602-  613 (20.19/ 9.46)	VPCQVSSTPKEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.01|      20|     533|      85|     104|      10
---------------------------------------------------------------------------
   85-  104 (36.08/20.21)	SSPQKLLMTLDKLELIGGKG
  621-  640 (39.93/23.11)	SWPQKLIMQLMPKQLIGNIG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26440 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ADGHLGGVQGLGPNPGQGRGGPIMGGPTQRPPFNQLEAARQQ
2) PGGMMPPGLINQNMQNQGQGMPGPGAQQLQGAVSSSIQTNQTGPPPTFQSQPGQVMGPAGNQGIQTATAIGMPSTQTTVMTGPVPTSQNTTGQQTQPPTSQQQTGVSQVGPGTGVPVRERHTI
3) QALMRQNQVGAAGNSPNSAVQTPPISAPGTAANQPGIMMSQTNTMAMGGGQITQ
4) QGVLEWIEKGKNPNDNQKVTKHVPCQVSSTPKEGEPDLKADSWP
5) RPLSPTSGNTNNLPIPSLPSPLPNDGSPMPNMNQLMPGQQHPAPPGYRPTQAAQVLSQQQMQVQAQQVQQGQIPGRPTFQPAGPPGYAGIRTQGARWPVNFPGPLAQQRTFLNAQAGPGGPGQGSALIAQLTQPPSSQFPSQRMDGPVLSHQMIPQQQQQQIRMSGMTINSQTGQIGHGPIGSVSLGSQGVMGQGIGPQNTIVQQ
783
456
728
580
225
824
578
781
623
429










Molecular Recognition Features






MoRF SequenceStartStop




NANANA