<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26430

Description Uncharacterized protein
SequenceMSFSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNINGALVPPAALLSILQKGLLYTEAEISIGEDGTEQRLVESLSLIDAVMPDVVATRQNQQNQQKQIVKTEPDANGEEIISNQSENMDVDGSIEIPPSKATVLRGHESEVFICAWNPSTDLLASGSGDSTARIWDMSDNSAAPNQLVLRHCIQKGGTEVPSNKDVTSLDWNCDGTLLATGSYDGYARIWMTDGRLASTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCTQQFSFHSAPALDVDWQTNTSFASCSTDQCIHVCKLNVDKPIKSFQGHTNEVNAIKWDPQGNLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPGTANPNVNLILASASFDSTVRLWDVDRGVCIHTLTKHTEPVYSVAFSPDGKFLASGSFDKCVHIWSTQSGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVRKQIFHF
Length487
PositionTail
OrganismPediculus humanus subsp. corporis (Body louse)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Paraneoptera> Psocodea> Phthiraptera> Anoplura> Pediculidae> Pediculus.
Aromaticity0.08
Grand average of hydropathy-0.300
Instability index39.22
Isoelectric point5.28
Molecular weight53282.89
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26430
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     308.17|      33|      39|     206|     238|       1
---------------------------------------------------------------------------
  136-  170 (33.90/16.34)	.......ATVLRGH................esevficaWNPST.........DLLASGSGDSTARI..W
  172-  225 (37.78/19.02)	MSD.NSAAP..NQ.lvlrhciqkggtevpsnkdvtsldWNCDG.........TLLATGSYDGYARI..W
  226-  266 (45.82/24.57)	MTD.GRLASTLGQH................kgpifalkWNKRG.........NYILSAGVDKTTII..W
  268-  309 (33.54/16.09)	AAS.GQCTQQFSFH................sapaldvdWQTN..........TSFASCSTDQCIHVckL
  310-  349 (46.12/24.77)	NVD.KPIKSFQG.H................tnevnaikWDPQG.........NLLASCSDDMTLKI..W
  351-  400 (40.86/21.14)	MKQ.DTCVHDLQAH................skeiytikWSPTGpgtanpnvnLILASASFDSTVRL..W
  401-  442 (47.02/25.39)	DVDrGVCIHTLTKH................tepvysvaFSPDG.........KFLASGSFDKCVHI..W
  443-  481 (23.13/ 8.91)	STQsGQLVHSY.KG................tggifevcWNSRG.........DKVGASASDGSVR....
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26430 with Med16 domain of Kingdom Metazoa
Unable to open file!