<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26427

Description "Thyroid hormone receptor-associated protein complex 100 kDa component, putative"
SequenceMVTMELSKVTSKTSSIKALLLKAWRERWTDLQWGIHIKMILPRGVSGDVYNLADCILQQALIGPGPNHLVLSYLKHSLSSQLISYAALLQHISKYNNFHKPHCIVSLLELLETSQVGMTCRGKTEEGILATSIASTILWLLQCYIYHLNKTLNGSQPLFEEIVGKCVTLLTNMLSSDFTMAMLYLAKYEDTEFHSEVLKKCKEIEQFYSQNPTLRSPSAIDTCLQKLHNIELNIKTECEPVTYCLQPLLAVEIMLAPGCETNYLVSKLIMLQNNPRLYCDIMRACLINLNSVLGTSEESLWGAFTILKLPNIFKQLHCTLRDDATQSYEYSQDIVDSFDLLLQLTPLLDIMDSKCNCNFVECILNELLKVNLISSKHVTYINEKRESMTSWIQKIQDCNISQQPLPKVIIRAEPTLARLLRTLDADNIKMVRVQTVLCPILGKSFDLITAVAAVDGKLRTFVTKLIKFNETYKYGHGEGPKQSQTRALLFDVSFLMLCSIVNIYGSQVVLSEEGGDSFFELWVRESMVEKGNPKSPESILALTDNSKVDALLAQFNSNEDFKTSQVKWNEICLNVPAAIKEVLLAWEQGTLSANDVKRILDSMRSKWCCLPICATAWLCSYMQILHQDALLKPMNMVQQFLAPPCIEDPNETFKSERFALMSMIIRRMQYNIHPSTTSKISLQHGIISNTPISMQLEKVWSKIHKQGWVSIEATHQFQSMLNTGGPPWFVTNVLKEITQYKYQEDLNRAVDLAFALFHLDIMNCTLSLLTEVLPQYLHNKLQ
Length782
PositionTail
OrganismPediculus humanus subsp. corporis (Body louse)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Paraneoptera> Psocodea> Phthiraptera> Anoplura> Pediculidae> Pediculus.
Aromaticity0.08
Grand average of hydropathy0.009
Instability index48.77
Isoelectric point6.46
Molecular weight88857.64
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26427
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     590.87|     196|     265|     271|     502|       1
---------------------------------------------------------------------------
  271-  494 (271.60/309.17)	LQNNPRLycDIMRAcLINLNSVLGTSEESlWGAFTiLKLPNIFKQLHCTLrDDATQSYEYSQDIVDSFDlllQLTPLLDIMDSKCNCNFVEcILNE..LLK.VNL.........ISSKHVTYINEKRESMTSWIQKIQdCNISQQPLPKViiraepTLARLLrtLDADNIKMvRVQTVLCPILGKSFDLITAVAAVDGKLRT.....FVTKLIKFNETYKYghgegpKQSQTRALlfDVSF
  542-  754 (319.27/235.62)	LTDNSKV..DALLA.QFNSNEDFKTSQVK.WNEIC.LNVPAAIKEVLLAW.EQGTLSANDVKRILDSMR...SKWCCLPICATAWLCSYMQ.ILHQdaLLKpMNMvqqflappcIEDPNETFKSERFALMSMIIRRMQ.YNIHPSTTSKI......SLQHGI..ISNTPISM.QLEKVWSKIHKQGWVSIEATHQFQSMLNTggppwFVTNVLKEITQYKY......QEDLNRAV..DLAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.51|      17|      18|     223|     239|       5
---------------------------------------------------------------------------
  223-  239 (31.49/19.33)	CLQKLHNIELNIKTECE
  244-  260 (32.01/19.77)	CLQPLLAVEIMLAPGCE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26427 with Med24 domain of Kingdom Metazoa
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