<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26417

Description Uncharacterized protein
SequenceMESCAEIENGPVGDVENTIFVAVGKRVEKSKTALFWAVKNFSGKRVCVLHVHQPENTYASVNKKVSANKLKQQAVKASYERERQNMMKLLNQYLLILAQKGVRAYKLWIEMENIEKGIVEIIAQKNIKWLVMGAAADKYYSKKMAELKSKKAIFVCQQAPLSCHIWFACKGYLIYTRGSRQVETEIEVSPPLLLLNKNVESKQSANLISESITYKQKSFDLSSLKSTGRMMLLQYHANTEENADEWDGMSRRSSSPRLSSSNWSNKGEVDSLHSTLCPKDEAQEEDSILPSVQKAHDGHHYSPSIIFLDEKNQGLATDGSYDRLEPAIMFTKNSKQDAFEESVKRWQAEDDAMEAIRKAKETETLHTKHMSKRKELEEELARGKEEVERMKNQQDELMKELQMVQDQRSILESRIAESHSSEKELEEKIISAVKLLISIRQKRDELLVEHKDAIREVNELRGSVQEEAASFCTPQFLSFSFMEINEATNNFDPSWKIGEGSYGSVYKGVLRHMHVAIKMLPFYGSQDHLEFQHEVEVSCRVRHPNLMTLIGTCPESRSLIYEYLQNGSLEDRLTCRNRTPPLPWQTRIRIATEICSALIFLHSNKPSIIHGNLKPTKVLLDGNYVCKLGDLDILRIIPPGENMTKTSPKSTSAYMDPEFLETGELAPELDVYSFGIIMMRLLTGRPALGIVNDVKCALENEVFNAVLDFSAGDWPLEQANQLAHLALRCCEKNHFNRPDLASEVWSVLEAMMVSCTASATCLGSRPHRRIPSHFICPIFQEVMKDPHIAADGFTYEADAIKGWLQSGHNTSPMTNLKLSDCNLLPNYALLYAIQEWQQRS
Length840
PositionTail
OrganismVitis vinifera (Grape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> Vitales> Vitaceae> Viteae> Vitis.
Aromaticity0.07
Grand average of hydropathy-0.437
Instability index51.70
Isoelectric point6.25
Molecular weight95454.05
Publications
PubMed=17721507

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
plasma membrane	GO:0005886	IEA:EnsemblPlants

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26417
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.88|      36|      46|     353|     398|       1
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  353-  398 (49.78/47.50)	MEA.IRKAKETEtlhtkhmskrKELEEELARGKEEVERMKNQQDELM
  411-  447 (50.10/28.66)	LESrIAESHSSE..........KELEEKIISAVKLLISIRQKRDELL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     274.85|      91|     589|      86|     190|       2
---------------------------------------------------------------------------
   86-  190 (128.63/127.82)	MMKLL..NQYLLIlaqkgVRAYKLWIEMEnIEKGIVEIIA......QKN.IKWLVMGAAADKYYSKkmAELKSkKAIFVCQQAPLSCHIWFACKGyliyTRGSRQVETEIeVSP
  678-  777 (146.22/99.85)	MMRLLtgRPALGI.....VNDVKCALENE.VFNAVLDFSAgdwpleQANqLAHLALRCCEKNHFNR..PDLAS.EVWSVLEAMMVSCTASATCLG....SRPHRRIPSHF.ICP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26417 with Med32 domain of Kingdom Viridiplantae
Unable to open file!