<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26415

Description Uncharacterized protein (Fragment)
SequenceYSYEELQAATGNFNPLNKLGEGGYGPVYRGLLDGIPVAVKVLDTSAGCLQGRSEFESEVRILSSLHHPHLVLLIGSCPDRAVLVYELMRNGSLETHLFSAGAALRAGPHTVGLTAGLSWQDRVRIASEVATALLFLHTSLPPVVHRDLKPANILLDAHMTAKLGDVGLASLVPTLARPAGHSAGADSRLVGTFEYMDPEYLHTAQFSPRSDVYSLGMVMLQMLTGKRGKQVFSQVEAERRDPLGFGPCIDPRAGTWPVAEAAAFADLALRCASPSRQDRPDLRSVILPTLMQLKQRTRLYDQQPPPPQQLQQEEQQQDVNVPPMFLCPITQDIMDEPVVAADGYTYEKLAIAEWMRRSSSSPLTNLPMKNTNLVENRTLRSAIREWRERQQHQQHQHQQHQQHQQHQHQQHQQHQQHQQHQQHQQQQQQQHQHQQQQQQQQQQQAKEESAVAQAAAQAPPPPPPPPLPPPPPPPRPVARADSGGW
Length485
PositionTail
OrganismVolvox carteri f. nagariensis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Chlorophyta> core chlorophytes> Chlorophyceae> CS clade> Chlamydomonadales> Volvocaceae> Volvox.
Aromaticity0.05
Grand average of hydropathy-0.623
Instability index59.36
Isoelectric point6.68
Molecular weight54076.32
Publications
PubMed=20616280

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26415
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      96.41|      14|      14|     391|     404|       1
---------------------------------------------------------------------------
  391-  404 (34.31/10.17)	QHQQHQ.HQQHQQHQ
  407-  421 (29.91/ 8.18)	QHQQHQqHQQHQQHQ
  422-  435 (32.19/ 9.21)	QHQQQQ.QQQHQHQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.31|      13|      39|      68|      80|       4
---------------------------------------------------------------------------
   68-   80 (26.85/17.43)	PHLV.LLIG.SCPDR
  108-  122 (18.46/ 9.85)	PHTVgLTAGlSWQDR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26415 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AIAEWMRRSSSSPLTNLPMKNTNLVENRTLRSAIREWRERQQHQQHQHQQHQQHQQHQHQQHQQHQQHQQHQQHQQQQQQQHQHQQQQQQQQQQQAKEESAVAQAAAQAPPPPPPPPLPPPPPPPRPVARADSGGW
2) RTRLYDQQPPPPQQLQQEEQQQDVNVPPMFLC
350
296
485
327










Molecular Recognition Features






MoRF SequenceStartStop




1) LPPPPPPPRP
2) QQAKEESAVAQA
467
443
476
454