<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26414

Description Uncharacterized protein (Fragment)
SequenceHEASGQLCSVQLPASSASPTQSAWCSISNLLAVALTPEPGSNTAPILIIEPSYPEDVTRLELPMAGPSDWVTSLEWSWPGQRRALLSATASGRVVVWTQPSQQGQDDAVSPRCIDDWHGQLLLDAGPAGRSAAAGGAGSSNPNANKQPQHQPSVKQEPGARPSSFGSASSTPHHVKQEPGYEQLDGTPAATAAAGFGRTPGGDVAHRSQQQQQPYRSPTPRMQPALAGVCWLRQPVAGRTWSTSALAMKRFDPLGDDGGGSAGPGRTEPAQSFDTLFSDEAMAPGAVPHWARPHQLTAAVLTASGSLTILWVMASKLPNTLSWYRSKSVRIPPPPEAAEATADGGADGAATATAEQPGGGASTEWHIARASMCAVHDGSLAVAAVYGKRRDTVYMYGMRGNPTLNGQLVTQPGAVATAGGGGGGGGGDRSMCRETPLVPPPTVAMTARLAVPQGLSVRQCRMYLYGAAIKRLFVLAHRSPSSSLHAGIPGWANPPPQQQHPQQQELKPAIVFCFSETLDDKGGGGGAVTGSWRVERSSQQLMESYGTVAGGAASAGGATADGPSSDLGISTDGSKLVVPYGSLLYTLDSETLAVLAVKDMGRVHGLARDTAPATLPGSLYGNMYGNGNGVLAPSPEAMAAAAAQQSVVHAATGCLSSNSCCLCSVVRVVRQHGDGGDLCDWLPDDGGGGGFGGGVGDGDGGDVLMLNICTVPDVVPPPSGSAAAAGGAATFERIEDTIACNMDTMRLAWAALHRLSVWDVAERLRCAWLAGRTEHVCRSLDQLDGLLVKLEVLRRLPHPQAAVLAADLLAGARILQYSDTLALTYGHQADSLNQPEVCTMAAHMVWFVLEVLTLMLAGLKLWAEGVAADKAAARASQQTAAAAAAAAAAAAAQQGEEGGAAAAAAAGGGVAAGGSTGPSGSGGLGAEAAGWMPLIRLFPDYNLIKHIQTVLLGAGNKSGAEGRPQMQGMHPAIQELLGGPEVISRARFLILALNHVNKTMQRMLGIHMQALQQQQQNGSGPAGPGTQGVAQGAAAGGGGGGGGGGAGAVTLVPGAPVVAVTAADVESAVKTGEMPKALMQRTLPFVFSGPFHLHYSRAKGLILQGYLAQCFRSDDLSKLSGAFSMSRETLLERYRALGLSTPLLDPRGAPHVEARRMWMSFRAPAPPPELHSHVLTGHVSNRQRQRWRRQRGAALALGSSAPLWAQTPGPLVDCLTSVPLPPGTSWSLEGAAAVGAVTVQMGPGRAWVCCAPPAELGSQWKRARLGLEQDLEY
Length1273
PositionTail
OrganismVolvox carteri f. nagariensis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Chlorophyta> core chlorophytes> Chlorophyceae> CS clade> Chlamydomonadales> Volvocaceae> Volvox.
Aromaticity0.05
Grand average of hydropathy-0.115
Instability index48.68
Isoelectric point6.71
Molecular weight131257.88
Publications
PubMed=20616280

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26414
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     748.87|     108|     617|     340|     447|       1
---------------------------------------------------------------------------
   61-  163 (93.81/29.54)	.............ELPMA..GpsdwvT..SLEWSWPgqrRALLSAT..ASGR.........VVVWTQ......P.SQQgQDDA........V...S.P..........R............................................CIDD.......................WHG.QLL.LDAGPAGRS............................................AAA..........GG.......AGSSNPNA...NKQ.PQ.H.QPSV....KQEPgarP..S
  164-  282 (106.47/34.67)	SFGSASSTPHHVKQEPGY..E.....QldGTPAATA...AAGFGRT..PGGD...........VAHR......S.QQQ.QQPY......RSP...T.P..........R............................................MQPA.......................LAGvCWL.RQPVAGRTW............................................STSalamkrfdplGD.......DGGGSAGP...GRTEPAQS.FDTLfsdeAM.........
  284-  341 (42.85/ 8.93)	...............P....G.....A..VPHWARP...HQLTAAVltASGS.........LTILWV......MaSKL.PNTL......SWYrskS.V..........R............................................IPPP.......................PEA.A................................................................................................................eA..T
  342-  447 (181.72/65.10)	ADGGADGAATATAEQPGG..G.....A..STEWHIA...RASMCAV..HDGS.........LAVAAV......Y.GKR.RDTV......YMY...G.M..........R............................................GNPT.......................LNG.QLV.TQPGAVATA............................................GGG..........GG.......GGGGDRSM...CRETPLVP.PPTV....AMTA.......
  449-  547 (36.80/ 6.49)	...........................................LAV..PQG..........LSV.............R.QCRM......YLY...G.AaikrlfvlahR............................................SPSSslhagipgwanpppqqqhpqqqeLKP.AIVfCFSETLDDK............................................GGG..........GG.......AVTGSWRV...ERSSQQLM.ES..............ygT
  548-  719 (69.05/19.53)	VAGGAASAGGATADGPSSdlG.....I..STD........GSKLVV..PYGSllytldsetLAVLAVkdmgrvH.GLA.RDTApatlpgSLY...GnM..........Y............................................GNG.........................NG.VLA.PSPEAMAAAaaqqsvvhaatgclssnscclcsvvrvvrqhgdggdlcdwlpddGGG..........GGfgggvgdGDGGDVLMlniCTVPDVVP.PPS................
  863-  961 (109.98/36.09)	AEGVAADKAAARASQQTA..A.....A..AAAAAAA...AAAQQGE..EGGA.........AAAAAA......G.G.....GV......AAG...G.S..........T............................................G.PS.......................GSG.GL.....GAEAAG............................................WMP..........LI.......RLFPDYNL...IKHIQTVL.LGAG....NKSG...A..E
  962- 1062 (53.14/13.10)	GRPQMQGMHPAIQE...............................................................................................llggpevisrarflilalnhvnktmqrmlgihmqalqqqqqngsGPAG.......................PGT.QGV.AQ.GA..AA............................................GGG..........GG.......GGGGGAGA...V...TLVPgAPVV....AVTA.......
 1066- 1131 (55.05/13.87)	......ESAVKTGEMPKA................LM...QRTLPFV..FSGP.........FHLH........Y.SRA.KG........................................................................................................LI.LQ.GYLAQC..........................................frSDD..........LS.......KLSGAFSM...SRETLL......................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.61|      16|      20|    1187|    1204|       2
---------------------------------------------------------------------------
 1189- 1204 (28.24/17.02)	RQRGAALALGSSAPL.....W
 1206- 1226 (25.37/ 7.30)	QTPGPLVDCLTSVPLppgtsW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.42|      15|      20|     733|     751|       3
---------------------------------------------------------------------------
  733-  751 (18.18/26.18)	R..IEDtIAcnmDTMRLAWAA
  754-  770 (25.24/15.33)	RlsVWD.VA...ERLRCAWLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.98|      16|      20|    1137|    1152|       5
---------------------------------------------------------------------------
 1137- 1152 (28.41/16.15)	LGLSTPLLDPRGAPHV
 1159- 1174 (30.56/18.07)	MSFRAPAPPPELHSHV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26414 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GQLVTQPGAVATAGGGGGGGGGDRSMCRETPLVP
2) HMQALQQQQQNGSGPAGPGTQGVAQGAAAGG
3) SGRVVVWTQPSQQGQDDAVSPRCIDDWHGQLLLDAGPAGRSAAAGGAGSSNPNANKQPQHQPSVKQEPGARPSSFGSASSTPHHVKQEPGYEQLDGTPAATAAAGFGRTPGGDVAHRSQQQQQPYRSPTPRMQP
4) STSALAMKRFDPLGDDGGGSAGPGRTEPAQSFDTLFSD
5) YRSKSVRIPPPPEAAEATADGGADGAATATAEQPGGGAST
406
1007
91
242
324
439
1037
224
279
363










Molecular Recognition Features






MoRF SequenceStartStop




NANANA