<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26412

Description Uncharacterized protein (Fragment)
SequenceMEDPALELCAGEMILYYNARFLPIFNLPSHVSGASREPFLQFNGMKAKVMYACLQLTLDEEHRQIRAGFPRLSAALEVARAIGKLSALRAARSAAAGGGPGAGPGLVAAGRSMAAAAEAAAAAAPAAALQAHCRSVVEQLDAKVCEEMLAAGGAQLPRPAKRPRTASPPQSSGPTPAAPGPASTSFTVTGLPKPLETAAQLLGVLLRIRALDGSAGSMAGGAAPALGGMKIHVLDDSGNPLSLPSTLTATLMAAAQGQAPGAKAGSAPGAAGGGGQARLDGALLAASAARLCNATQVRMLLPGVLVANVLLEGPGNPAPLRVAVDCADKAFELDPWATPTTQVFRRVSSLATRVLTYYNKRASLSAAHRTFTSTSLNAAAPAPAAATAAVGLPAGAATTGVAALLPPEPTSPGAAALEDFLLWLLSCRDVFSKRCAATGRLMAWDPSVQYPVPPIFRVFNPCLVGALSTPRLPREELRLRAVDLSRVPAYHMHVAPVEQLGWAEDVPAEAVEELGSSAAIMEVTCSAPG
Length529
PositionTail
OrganismVolvox carteri f. nagariensis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Chlorophyta> core chlorophytes> Chlorophyceae> CS clade> Chlamydomonadales> Volvocaceae> Volvox.
Aromaticity0.05
Grand average of hydropathy0.194
Instability index48.23
Isoelectric point8.67
Molecular weight53911.54
Publications
PubMed=20616280

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26412
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     176.00|      41|      43|     188|     228|       1
---------------------------------------------------------------------------
   99-  150 (33.48/ 7.76)	GPGAGPGLvaAG...rsmaA...AAEAAAAAAPAAALQAHCRsvVEQLDAKV.CEemlA
  173-  218 (51.75/16.44)	..GPTPAA..PGpastsftV...TGLPKPLETAAQLLGVLLR..IRALDGSA.GS...M
  219-  263 (43.36/12.46)	AGGAAPAL..GG...mkihVlddSG..NPLSLPSTLTATLM....AAAQGQApGA...K
  378-  416 (47.40/14.38)	AAAPAPAA..AT.....aaV....GLPAG..AATTGVAALLP..PEPTSPGA.AA....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.14|      21|     196|      67|      96|       3
---------------------------------------------------------------------------
   67-   96 (28.39/27.74)	AGFPRLSaalevaraiGKLSALRAARSAAA
  274-  294 (35.75/17.40)	GGQARLD.........GALLAASAARLCNA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26412 with Med27 domain of Kingdom Viridiplantae
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