<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26411

Description Uncharacterized protein
SequenceMQHAGDLKERCTGILLPLVAVALQLVERVLDPIPLTLLSVSQQQQGTRTPQLTPYRLKCEKEPLNPRLGPPDFYFPAPDCPEESLTRDTCTNGYKEAIEGIEEARETTWTLATNNALWAKENISRYKESLRKRLRAVTNALVRKRKAGQVYDVPLVGALLAKAGQFPERHTYGEDYRKKWIEDLSQRKRLSLLAEHVPHGFHRRTLFEALVKQNVPFLRATWFIKISYLNQVRPASSAGADKSHGKRLEQWTRDVLDYAQSVLDEICSNASRAALAQAYDSVQSVETDLDGHAKWHYIVRLVQWQYAEGLLQQSHVVEWALKQIQEKESLDGLELLLPVLLEFMDSLSLSQVHVRMLVDICQHWLRQLGVSNVLPSPEEQPQQYRIVVTFVEILRYLLVAVPDTFVAFDCFPLLPCVTTLEGMEIVKDGDPKADTTKGNGRPGNLCPYREVYIMEVVDSIQKRASSLTKAVNPGVLRNNDGKVIQALDKSLAAGDLLSAFQAVFDSDFSGYDQLPGEWKTSSSNLPFLSGMLNNVNLSDLFAVRYLCEWAVCDFRDTRQASSIKVSTGIKDLSRIYTAASVLLLKKDFPSGSHAKKARVKGASDSKLKRSPMHEIIVAWIDQHDSRKGESMEKMQLLLYELVRRGIFHPDAYVRQLIVEGLLERRESPSDISRAARHRRVLRYLPGLPTLDLDDTKDTDDIPENARLYRNERRLALHGFHSDDKIAKDRRLKDRTYSSEVKVPMSGSFVTNTLDRKQVSRKPMKLLEVKQAVCAYLQIPDTLAGQQKFCAGPVGILKRVAGSSIGDTHGCEECNGSKRLKTGESKGTGFIADPEDSWWIKKVPKVSDPVKLEASIKPPKQGVRGRPKTVRKTQSLAQLHSARVDGGQGASSSHSFDSKVHCPYHRPAASTKLSLNDLRPKNDFRSIGSALKQLTVSEKFNFSSWLDRTIRSLLGEGTANKTGPTARCQLNDEQFGVVVYMLDMVFDYNVLVRLLLWLLPMAAGTSGISARPPVNNKETCGVGEAAILSCLRRYELVITSLNLLPEVLTVGIQCASSVIGTIPSGRSQILIYVSELLNKYKGLMTVQSWQKTWRGSCDQKVALELEALKVGDSESALGFINTVGEDRDDPIPQRLNSRLARVGASMKDSVQKALGEAVSQIVSKERELQTANFAIKDAVAEKVEEYSHRVVTGLLEAIKQNGTAQTDSGLVNAAVSALVSSASSSAANAHEVLTANNAGPDISLRCARRILQLHVRCLRLLKDGLDDRQSRVLDVSLASEASTIVAGHFVHIPGRAPRSQFHLSPETPELGTLGNDFAAGQNVITSGRAASATALVVMAVVHGVLSLERLVTVLKIRDGLEALHLPKLFGSSNGLSRGVAMGSTLKSDEVHIHWFRILIGDCKAIAGGLVADILGDATLVALARTQRLLPLNSVFPMAYAMFCGLLRRQVLSRMSNASRDDSILQSLSVAVADIVKHEPFREVCLQDTRALYVLLSSDGGSSDYAALLDEQGFDARLKVEAMLPFSGRLFLHSILDGVLPSSMQWQDDEAWVKVRHVHDPKHAQQQMVLILDELQPATFHWQWLELRLHLNELVFVEKIEAHNSAVKAMQASVGASDQLYECEKVFTENVLTNVLFRPDAGALYSEVLHSLGKPLEEYIIKLVKWSLQGVDVLYGKKSLRQRLEQTKGYIRPTSALKSWGWQPPWSVVEAASPEEGEVSQDNASAAGGSSRDDALSLHFAIEKALADLVLPCLARSLNDTCSGFAFDLVSQMAELEQQVTLLTRSSAKFSVVPSTADGPAAKNQRRGARSGLETASPSVRRRPPEASAVSAAALQSSMWLRLQFLLPLLRIIYCDRENMRLTLAPVLLRLLGTRVVYESAESFGIHQPESSMLNKGQWNAELASMAAAASAGEELFDRLLSVLHALLSNTWAVWLKPRGRAAKPPREVPPFEREAAEKLQTELDHMQLPMSLRMRLQAAMPVFPPGPTFSLSAAPPQVPQSAFTALQANLSPSLHLSHSQKLGADLKSKPSPSLDTETGMDPWLLLEDGTGLPATVGSANSSTTADGSTLKACPWLKGAVRVRRTELTHLGSVDSDT
Length2096
PositionKinase
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.06
Grand average of hydropathy-0.201
Instability index42.62
Isoelectric point8.50
Molecular weight231289.19
Publications
PubMed=21551031

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26411
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.47|      29|      29|    2015|    2043|       1
---------------------------------------------------------------------------
 2015- 2043 (52.33/31.07)	LSHSQKLGADLKS.KPSPSLDTET.GMDPWL
 2045- 2075 (43.13/24.19)	LEDGTGLPATVGSaNSSTTADGSTlKACPWL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.27|      26|      28|    1633|    1658|       2
---------------------------------------------------------------------------
 1613- 1629 (20.02/ 7.30)	........GA..SDQLYECEKVFTE...NV
 1633- 1658 (45.41/25.70)	VLFR.PDAGALYSEVLHSLGKPLEE...YI
 1662- 1689 (29.84/14.42)	VKWSlQGVDVLYGK..KSLRQRLEQtkgYI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.15|      19|      25|    1729|    1747|       3
---------------------------------------------------------------------------
 1729- 1747 (30.64/19.55)	SRDDALS.LHFAIEKALADL
 1755- 1774 (28.51/17.66)	SLNDTCSgFAFDLVSQMAEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.61|      24|     183|     337|     364|       4
---------------------------------------------------------------------------
  337-  364 (35.86/30.57)	LPVLLEFMDSLSLSQVH.VRMLvdiCQhW
  525-  549 (41.75/22.60)	LPFLSGMLNNVNLSDLFaVRYL...CE.W
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.12|      21|     184|    1045|    1087|       5
---------------------------------------------------------------------------
 1045- 1065 (36.52/52.51)	EVLTVG.IQCASSVIGTIPSGR
 1105- 1126 (30.60/ 6.30)	EALKVGdSESALGFINTVGEDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.94|      21|      29|     654|     682|       6
---------------------------------------------------------------------------
  662-  687 (30.95/22.78)	LERRESPSDISRAARHRR..vlrylPGL
  692-  719 (30.99/25.89)	LDDTKDTDDIPENARLYRnerrlalHGF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.91|      23|      30|     423|     445|       7
---------------------------------------------------------------------------
  423-  445 (40.78/23.40)	MEIVKDGDPKADTTKGNGRPGNL
  454-  476 (37.12/20.65)	MEVVDSIQKRASSLTKAVNPGVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.67|      33|      55|     844|     878|       8
---------------------------------------------------------------------------
  844-  878 (52.13/41.94)	KVSDPV.KLEASIKPPKQGVrgRPKT.VRKTQS.LAQL
  898-  933 (46.54/29.94)	KVHCPYhRPAASTKLSLNDL..RPKNdFRSIGSaLKQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.26|      11|      30|    1285|    1295|       9
---------------------------------------------------------------------------
 1285- 1295 (22.38/15.41)	AGHFVHIPGRA
 1318- 1328 (19.88/12.76)	AGQNVITSGRA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.74|      15|      29|    1966|    1980|      10
---------------------------------------------------------------------------
 1966- 1980 (28.49/19.14)	QLPMSLRMRLQAAM.P
 1996- 2011 (22.25/13.10)	QVPQSAFTALQANLsP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.49|      23|      29|     739|     766|      11
---------------------------------------------------------------------------
  754-  781 (24.43/25.89)	DRKQVSRKPMKLLevKQavCAYLqIPDT
  784-  807 (35.05/16.83)	GQQKFCAGPVGIL.kRV..AGSS.IGDT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.05|      17|      30|    1145|    1161|      12
---------------------------------------------------------------------------
 1145- 1161 (26.51/15.90)	MKDSVQKALGEAVSQIV
 1174- 1190 (24.97/14.52)	IKDAVAEKVEEYSHRVV
 1204- 1218 (21.57/11.47)	QTDS..GLVNAAVSALV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.80|      34|     294|    1484|    1544|      13
---------------------------------------------------------------------------
 1508- 1544 (54.74/71.32)	DEqgfDARLKVEAML.PFSGRLFLHSILDGVLPSSMQW
 1546- 1580 (59.06/25.10)	DD...EAWVKVRHVHdPKHAQQQMVLILDELQPATFHW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.30|      21|      32|    1897|    1917|      14
---------------------------------------------------------------------------
 1897- 1917 (35.74/22.02)	WNAELASMAAAASAGEEL..FDR
 1930- 1952 (35.56/21.88)	WAVWLKPRGRAAKPPREVppFER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.41|      11|     270|     957|     967|      15
---------------------------------------------------------------------------
  957-  967 (22.65/13.44)	TANKTGP..TARC
 1233- 1245 (17.76/ 8.78)	TANNAGPdiSLRC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.09|      21|      31|     553|     575|      23
---------------------------------------------------------------------------
  553-  575 (26.33/22.90)	DFRDTRQASSIKVStGIKDlSRI
  587-  607 (35.77/20.87)	DFPSGSHAKKARVK.GASD.SKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.27|      12|      27|    1844|    1856|      26
---------------------------------------------------------------------------
 1844- 1856 (18.18/14.04)	LLPlLRIIYCDRE
 1869- 1880 (20.09/10.47)	LLG.TRVVYESAE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26411 with Med12 domain of Kingdom Viridiplantae
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