<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26410

Description Uncharacterized protein
SequenceMMFTNVFRIVSAAVAVGAVVADECRFYRAGCKKSRGFSSLRTIPRGQKLKLWLFLPGRHIDSRPSLDLKVLKSGVWTCPGTSTEVTAALCQALRNRFERALGAFAYVRFGDMFVKCKRYTADDSDFRRTLPSCEATFFASEEGVFLHLRISRRRMRPLAASDVRAVLTQHLTSSTPSIENPAVVVAPYGLTGWLTGCCPGDLVRQISQSKSGPLKDSSIKSSVTPRNGGFASRSWYVEVRMRFQLAKGKSQPKTDQNQWIEKVFIFPPEAVVVPTVPPISARTYLKRCWLRKQAGTHWLEDAFSVRKFLPLTNLAGHRLQAMGKANTIWKLNSNGSKSSTSSGSGGSSIKSSDSRGSSGSESDVNDDGDYREDADSAATLAGPNGTMISSSGRTPDGDNKRLPGSKRGREHGNDMHNSSKSARRTSPEISSSAANNAESTKGAPSQAGTPWDWTDQVNIQSDADFFAEFGDFGDFFEGDGLGFGEPPGTMESQSYMFPFDGDGSNTPGTQFIETSDPMRLPILDFPMLEVLGQAEDLEKEQDTGTVVDEKCEPESSPPVLVPAGLSLVAKSEAALIFASEYAPIDITGLDKLDRKPAYKPDARKETSASQSASYVYGATPPPTPKLDSYERKAHSRWRTEFEERKNVAVNNFGNLKYGETSPTDNTLVAKTGNSHRIQGPLAATLATELECAMFQLQLHSVKGFAYCAHPNEHAKLTESSHKECTSEITDSSDACDSLRRKPDRKKVPERIAGDTDDLSHDGPRPVEVGVWRPVGLPKPQQRPPDGGRGAVSNIASPEVGTPSEISDAAMQDIVDLIPLLVQQAACCNDISLNGEHGDGALAWLTLQQKLSQQDLSWTSDVCDPSITEISPATVASILQSDMRQAVGVAFSDINAAGPLSLAEWCRGKTPTDNHSGPSDSKDLVSSITGEPITPPQSAKCLRLRYQEDWLRTAPRSLRYWEKAPFEPYGYPKSVTYYVICAGLDPLLCSALEFFQQLSSVYEACKLGAHIPANVTAQTVSKRLLPGFVPVDFPSKLKGSSSSINLANDYITAMDNGWDVSEFRKSLRKACKSLNLGNSVSLEADHENSPSTVLYVVSPSSEPSMVLQTLMETCQSIGPNLNIKKASGKNSMEDGKQPVAGFSIGRLALQVVTPETVIRLSSSPAAGLDILKELSFAVYNKLRRIPYKAAEDTQQYGFASKSRMGLQSNTAMTWKDCRNVSLLDTGNLRWDKSWSSSRLLETSASGPPAPFRLLYEPLFILADGCILDHSMGQLTKARTEEVSTQSFGIPDTGSVADGVSRTSSQPLSFHCCYSWTSNWLWLIAVWIDSQGKMLDVNVFPSPRCTQDKDDCSKELCQLFSQATGATQLPSPVWVICMKPSTKRNVSAVVGFPSSPGSSSSFVSRGLLPKPEINFHAGKLAGVTLATVSGDESLQVLSLAESAAASTWSVASSSGLASGFGMAKTIASLNGAYLFIPAHGLRSLSSSDSVASNKVNVPAFGQWIQSRGSVSPVASGYVISGPTTALRAEVAQVSMEEEWPSTLQIGLVAHFGSSKARQETQGMRLGGNGLCDNAGSSSNTSGSSASTGKQGSSSGIKQQIRYVLEQLGAEFYGLSWLTISPMYLHRRRPLPYHCDVAQRLEKLLGYMEAAAELSPTATTATAAATAS
Length1665
PositionKinase
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.08
Grand average of hydropathy-0.330
Instability index50.03
Isoelectric point7.08
Molecular weight179811.36
Publications
PubMed=21551031

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26410
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     188.67|      55|     116|    1357|    1415|       1
---------------------------------------------------------------------------
 1357- 1415 (92.86/63.78)	LFSQATGATQLPSPVWVicmkPSTKRNVSAVVGFPSSPGSSSSFVSRGLLPKPEINFHA
 1472- 1526 (95.82/56.18)	LFIPAHGLRSLSSSDSV....ASNKVNVPAFGQWIQSRGSVSPVASGYVISGPTTALRA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     314.72|      86|     116|     907|     997|       2
---------------------------------------------------------------------------
   40-   93 (46.55/22.09)	.............................................LRTIPRgqKLKLWLFLPGRH..IDSRPSLDLKVLksgvwtCPGTST..EVTAAL..CQAL
  907-  997 (141.09/106.51)	GKTPTDnhsGPSDSKDLVSSI..TGEPITPPQSAKCLRlRYQEDwLRTAPR..SLRYWEKAPFEP..YGYPKSVTYYVI......CAGLDP..LLCSALEFFQQL
 1026- 1116 (127.08/79.26)	GFVPVD...FPSKLKGSSSSInlANDYITAMDNGWDVS.EFRKS.LRKACK..SLNLGNSVSLEAdhENSPSTV.LYVV......SPSSEPsmVLQTLMETCQSI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.67|      13|      18|     475|     488|       3
---------------------------------------------------------------------------
  475-  488 (22.86/18.23)	FFEGDGLGfGEPPG
  496-  508 (27.80/16.56)	MFPFDGDG.SNTPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.39|      21|     115|     214|     234|       4
---------------------------------------------------------------------------
  214-  234 (36.58/17.97)	LKDSSIKSSVTPRNGGFASRS
  331-  346 (20.67/ 6.67)	LNSNGSKSSTSSGSGG.....
  348-  362 (20.14/ 6.29)	....SIKSS..DSRGSSGSES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.29|      36|     116|     621|     707|       5
---------------------------------------------------------------------------
  641-  682 (52.58/89.96)	FEERKNVAVNNFGNLKYGETSPTDNTLvaKTGNShriqGPLA
 1213- 1248 (66.71/17.24)	WKDCRNVSLLDTGNLRWDKSWSSSRLL..ETSAS....GPPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.62|      46|     123|     701|     752|       6
---------------------------------------------------------------------------
  701-  752 (73.90/57.52)	VKGFAYC...AHPNEH.....AKLTeSSHKECTSEITDSSDACDslrrkPDRKKV.PERIA
  821-  875 (68.72/39.77)	VQQAACCndiSLNGEHgdgalAWLT.LQQKLSQQDLSWTSDVCD.....PSITEIsPATVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.15|      31|     368|     397|     446|       7
---------------------------------------------------------------------------
  401-  432 (50.47/33.19)	RLPGSKRGREHGNDmHNSSKSARRTSPEISSS
 1562- 1592 (53.68/14.07)	RLGGNGLCDNAGSS.SNTSGSSASTGKQGSSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26410 with Med13 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ANTIWKLNSNGSKSSTSSGSGGSSIKSSDSRGSSGSESDVNDDGDYREDADSAATLAGPNGTMISSSGRTPDGDNKRLPGSKRGREHGNDMHNSSKSARRTSPEISSSAANNAESTKGAPSQAGTPWDWTDQV
2) EGDGLGFGEPPGTMESQSYMFPFDGDGSNTPGTQFIETSD
3) GMRLGGNGLCDNAGSSSNTSGSSASTGKQG
4) KLTESSHKECTSEITDSSDACDSLRRKPDRKKVPERIAGDTDDLSHDGPRPVEVGVWRPVGLPKPQQRPPDGGRGAVSNIASPEVGTPSEISD
325
477
1560
715
457
516
1589
807










Molecular Recognition Features






MoRF SequenceStartStop




NANANA