<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26407

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMAKVTLDSLPLKRVLALEESGIELYPPESSQDEKPLSLLQSLDFERPDEKEAKKSKSGKDGASQWPWQGLIEHFHQAREELMTLLDFIAHVESNEALTVTHMMKPKPLPNEAGADLALRTASKSRSYKEIASYLKRNAKSLERQVERESVFYGALMRLQRNWKIKRQRGVSAGPGGKAGFLIDLSFPLSVDPSLISSSRTAAWTLIKVNQDANGLLSVQIPAGKTITTLQVYLSRELEEYTSKQQLEQPPRRRDNRDPDEGTSSANHRLRNIQLSIFDELIFECLCRDVLQPSSATSLHEIGESSLDIGAGPSIASFFRLVEDDAAKDATLKEVDVKRLPLAGSLRIYLQQGFYSMLLASIVQRSAPGPRAGTGKEEPANLLKNFSVLARHRSAGDKIVSLLDTLVLQVPQLWFRSHPTWRPFVSAWDVYFDIPEAIMNGGQMKHLEWNVLVRETSATFQCTLVLRQEILSIEGLDGCMPLGASGQESTGMKSCVCSVSELPFFLLTQIAGKVIGWLEEEAVLLGPRVKRDFLSIVFNIQNNGLVSLVAAPSGYCINWWLRFYSFGSDDTAAASGASAPASERFLGPLPLETLRAALVLALSSAREDAKLVKGRGNLTSTVISSRHSCCCVVQLPTRTNLDLCFDRGVGDTDMAILPWSVRFSNLDKSDRCPLDSCVRAKCRWWVRKGMTLPDTESQRGRKGEQKLWEGKQKCKCRDWAFWAEEEKEQETGGHQHQQQ
Length738
PositionHead
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.07
Grand average of hydropathy-0.312
Instability index46.04
Isoelectric point7.50
Molecular weight82265.01
Publications
PubMed=21551031

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
core mediator complex	GO:0070847	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26407
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.06|      22|      31|     253|     276|       3
---------------------------------------------------------------------------
  253-  276 (34.19/30.63)	RDNRDPDEGTSSanHRLRNIQLSI
  287-  308 (36.86/25.59)	RDVLQPSSATSL..HEIGESSLDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.05|      16|      26|     417|     432|       4
---------------------------------------------------------------------------
  417-  432 (33.10/24.94)	HPTWRPFVSAWDVYFD
  445-  460 (27.95/19.81)	HLEWNVLVRETSATFQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      28.24|      10|      27|     358|     370|       5
---------------------------------------------------------------------------
  358-  370 ( 9.50/17.43)	LASivQRSApGPR
  388-  397 (18.74/11.51)	LAR..HRSA.GDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.63|      18|      31|     532|     551|       6
---------------------------------------------------------------------------
  532-  551 (25.97/23.22)	FLSivFNIQNNGLVSLVAAP
  562-  579 (31.66/21.21)	FYS..FGSDDTAAASGASAP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26407 with Med17 domain of Kingdom Viridiplantae
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