<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26406

Description "Ubiquitin-protein ligase, PUB52"
SequenceMAKLDVDSSSTADREDDSCEGPSRPPPQTRRKSLQELSLLSQRTFKEYEYAELEAATKNFSLDLKLGEGGYGLVFKGKLHGRDVAIKVLKKEGFQRTQEFQHEVELLGRIQHPHMVVLLGCCSHRGCLVYEFMANGSLDDRLFCKNGTPPLPWYARFRIAAEVASALYFLHNLGPEPVVHRDLKPANILLDHNNVSKVGDVGLAKLVPERLAAINSTYFRDTTPVGTFAYIDPEYQRTGLFGPKSDVYALGIVILQLLTGRGPVGVHAIVEEAIECGNFSSVLDSSAGDWPVGKAEEVACLALQCAEMRRRQRPMLETVLPMLDGARNYAENCAAIHATNRALAGDPKAVPPSIFLCPIFREVMQEPVVAADGYTYEYEAIRQWFQAHDTSPLTNLRLEHKQLTPHHALNKLITEWKTRAKV
Length422
PositionTail
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.08
Grand average of hydropathy-0.257
Instability index36.44
Isoelectric point6.41
Molecular weight47024.27
Publications
PubMed=21551031

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
ligase activity	GO:0016874	IEA:UniProtKB-KW
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26406
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.13|      34|      51|     134|     169|       1
---------------------------------------------------------------------------
  134-  169 (58.81/39.86)	ANGSLDDRLFCKNGTPPLPWYARFRIAAevASALYF
  186-  219 (57.32/33.35)	ANILLDHNNVSKVGDVGLAKLVPERLAA..INSTYF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26406 with Med32 domain of Kingdom Viridiplantae
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