<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26405

Description Uncharacterized protein
SequenceMMFTNVFRIVSAAVAVGAVVADECRFYRAGCKKSRGFSSLRTIPRGQKLKLWLFLPGRHIDSRSSLDLRVLKSGVWTCPGTSTEVTAALCQALRNRFERALGAFAYVRFGDMFVKCKRYTADDSDFRRTLPSCEATFFASEEGVFVHLRISRRRMRPLAASDVRAVLTQHLTSSTPPIENPAVVVAPYGLTGWLTGCCPGDLVRQISQSKSGPLKDSSIKSSVTPRNGGFASRSWYVEVRMRFQLAKGKSQPKTDQNQWIEKVFIFPPEAVVVPTVPPISARTYLKRCWLRKQAGTHWLEDAFSVRKFLPLTNLAGHRLQAMGKANTIWKLNSNGSKSSTSSGSGGSSIKSSDSRGSSGSESDVNDDGDYREDADSAATLAGPNGTMISSSGRTPDGDNKRLPGSKRGREHGNDMHNSSKSARRTSPEISSSAANNAESTKGAPSQAGTPWDWTDQVNMQSDADFFAEFGDFGDFFEGDGLGFGEPPGTMESQSYMFPFDGDGSNTPGTQFIETSDPMRLPILDFPMLEVLGQAEDLEKEQDTGTVVDEKCEPESSPPVLVPAGLSLVAKSEAALIFASEYAPIDITGLDKLDRKPAYKPDARKETSASQSASYVYGATPPPTPKLDSYERKAHSRWRTEFEERKNVAVNNFGNLKYGETSPTDNTLVAKTGNSHRIQGPLAATLATELECAMFQLQLHSVKGFAYCAHPNEHAKLTESSHKECTSEITDSSDACDSLRRKPDRKKVPERIAGDTDDLSHDGPRPVEVGVWRPVGLPKPQQRPPDGGRGVVSNIASPEVGTPSEISDAAMQDIVDLIPLLVQQAACCNDISLNGEHGDGALAWLTLQQKLSQQDLSWTSDVCDPSITEISPATVASILQSDMRQAVGVAFSDINAAGPLSLAEWCRGKTPTDNHSGPSDSKDLDLDNHAPDFRRSGREAEDAAQRRLCVDDAESQALSYAMLPVPTLLVGYQEDWLRTAPRSLRYWEKAPFEPYGYPKSVTYYVICAGLDPLLCSALEFFQQLSSVYEACKLGAHIPATVTAQTVSKRLLPGFVPVDFPSKLKGSSSSINLANDYITAMDNGWDVSEFRKSLRKACKSLNLGNSVSLEADHENSPSTVLYVVSPSSEPSMVLQTLMETCQSIGPNLNIKKASGKNSMEDGKQPVVGFSIGRLALQVVTPETVIRLSSSPAAGLDILKELSFAVYNKLRRIPYKAAEDTQQYGFASKSRMGLQSNTAMTWKDCRNVSLLDTGNLRWDKSWSSSRLLETSASGPPAPFRLLYEPLFILADGCLLDHSMGQLTKARTEEVSTQSFGIPDTGSVADGVSRTSSQPLSFHCCYSWTSNWLWLIAVWIDSQGKMLDVNGQQLLATMSRTAGNRGHTVTVTRMGVLYETEYQEWQRVFMNIAGDESRAWPVVIRPDSGGDGSSLSQQRNVSAVVGFPSSPGSSSSFVSRGLNPKPEINFHAGKLAGVTLATVSGDESLQVLSLAESAAASTWSVASSSGLASGFGMAKTIASLNGAYLFIPAHGLRSLSSSDSVASNKVNAPAFGQWIQSRGSVSPVASGYVISGPTTALRAEVAQVSMEEEWPSTLQIGLVAHFGSSKARQETQGMRLGGNGLCDNAGSSSNTGGSSAGTGKQGSSSGIKQQIRYVLEQLGAEFYGLSWLTISPMYLHRRRPLPYHCDVAQRLEKLLGYMEAAAELSPTATTATAAATAS
Length1714
PositionKinase
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.08
Grand average of hydropathy-0.348
Instability index49.27
Isoelectric point6.37
Molecular weight185271.93
Publications
PubMed=21551031

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26405
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     179.30|      48|     116|     976|    1023|       1
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   40-   93 (69.11/39.05)	LRTIPRgqKLKLWLFLPGRHIDSRSSLDLRVLksgvwtCPGTST..EVTAAL..CQAL
  976- 1023 (89.02/52.51)	LRTAPR..SLRYWEKAPFEPYGYPKSVTYYVI......CAGLDP..LLCSALEFFQQL
 1114- 1140 (21.17/ 6.61)	......................SPSTV.LYVV......SPSSEPsmVLQTLMETCQ..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     319.33|      88|     124|     313|     403|       2
---------------------------------------------------------------------------
  313-  403 (143.60/105.10)	NLAGHRLQAMGKANTIWKLNSNGSKSSTSS..GSGGsSIKSSDSRGSSG.SESDVNDDGDYREdADSAAtLAGPNGTMISSSGRTP.DGDNKRLP
  435-  507 (122.79/77.31)	NNAESTKGAPSQAGTPWDWTDQVNMQSDADffAEFG....................DFGDFFE.GDGLG.FGEPPGTMESQSYMFPfDGDGSNTP
  876-  917 (52.93/27.69)	.....................................SILQSDMRQAVGvAFSDINA..............AGPLSLAEWCRGKTP.T.DNHSGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.29|      36|     116|     621|     707|       3
---------------------------------------------------------------------------
  641-  682 (52.58/74.94)	FEERKNVAVNNFGNLKYGETSPTDNTLvaKTGNShriqGPLA
 1239- 1274 (66.71/14.94)	WKDCRNVSLLDTGNLRWDKSWSSSRLL..ETSAS....GPPA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.14|      19|      21|    1414|    1432|       4
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 1414- 1432 (34.86/19.47)	VVIRPDSGGDGSS.LSQQRN
 1436- 1455 (30.28/15.71)	VVGFPSSPGSSSSfVSRGLN
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.78|      20|      22|    1524|    1545|       5
---------------------------------------------------------------------------
 1526- 1545 (34.39/18.80)	HG..LRSLSSSDSVASNKV.NAP
 1547- 1569 (27.38/ 8.14)	FGqwIQSRGSVSPVASGYViSGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.42|      20|     274|    1214|    1237|       6
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 1214- 1237 (26.83/24.94)	AAEDTqqYGFASKSrmGLQSNTAM
 1490- 1509 (36.60/19.36)	AAAST..WSVASSS..GLASGFGM
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.90|      17|      24|     761|     777|       7
---------------------------------------------------------------------------
  761-  777 (35.23/20.19)	DGPRPVEVGVWRP.VGLP
  785-  802 (27.67/14.14)	DGGRGVVSNIASPeVGTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.09|      23|      24|     816|     838|       8
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  816-  838 (41.37/29.09)	LIPLLVQQAACCNDISLNGEHGD
  841-  863 (41.72/29.42)	LAWLTLQQKLSQQDLSWTSDVCD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.42|      22|      29|    1052|    1073|      11
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 1052- 1073 (37.88/20.73)	GFVPVDFPSKLKGSSSSINLAN
 1082- 1103 (39.54/21.96)	GWDVSEFRKSLRKACKSLNLGN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26405 with Med13 domain of Kingdom Viridiplantae
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