<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26395

Description Uncharacterized protein
SequenceMDWRSGLCSDARNKIVERIMDTLQKHMPHNLPDGMNELLEIACRFEERQDYIRRISVKMLSLEYKSSQNNSNAPPPNPSDASQMVSGTSSLMGPQQPGLQQQPQQIQQQHIQQQQPQQQQLQQQQQQQQQLHMRQAQAQDQLSGREGAHGRADREPGLLLLGEQALLELAEKLEDSASKGAGEERRTNLVSKALRDGSAEVAVTCKWPSSKDEAHRFTNVKFLKNSEILPLDLTGVNPDRQGYFCLNEWNWTAGSGSQGLEAGDVVYYSTHKNLEEPA
Length278
PositionTail
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.05
Grand average of hydropathy-0.909
Instability index60.99
Isoelectric point5.56
Molecular weight31296.47
Publications
PubMed=21551031

Function

Annotated function
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro
GO - Biological Process

Interaction

Binary Interactions

Repeat regions

Repeats

>MDP26395
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.66|      20|      20|      94|     113|       1
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   94-  113 (41.22/18.02)	PQQPGLQQQPQQIQQQHIQQ
  116-  135 (40.44/17.55)	PQQQQLQQQQQQQQQLHMRQ
---------------------------------------------------------------------------




Explaination for Stockholm format The "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space.

#=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00)

#=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column. It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column. This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.

#=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.

Alignment of MDP26395 with Med15 domain of Kingdom Viridiplantae

Intrinsically Disordered Regions

IDR SequenceStartStop
1) LEYKSSQNNSNAPPPNPSDASQMVSGTSSLMGPQQPGLQQQPQQIQQQHIQQQQPQQQQLQQQQQQQQQLHMRQAQAQDQLSGREGAHGRADREPGLLLL
62
161

Molecular Recognition Features

MoRF SequenceStartStop
NANANA