<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26394

Description Uncharacterized protein
SequenceMRMMQARQTQVQPQQQQQQQQQQQQQQPQQQPQHQQQQQQPQSSQPPHVASQQMLYRMHMKQKQPGLQQQQQPTSMVLKPSGINSQQSLLPQQQQQQPQQQPPVTLLQHHQQQQQQQQQLPPLQQQQQQQQPQLAGLSQPQSNMSQHQPSLMQQQQQPYMQQQQQQPSAQALHQQQLLSSGQQMLQQQMLQPKQQQALPQQNQPLGMMQQRAVSEASSASVDSGQTAQSATIDQQETVWNKLQNLKDKYLPDMNDLRNMLVARSQQSMPADQLQKLNHYKDVLSRMIPYLSASRTNLPKEFRLDKLEAFEKQIVSIMETFKKRKLPQQQQQQQVQLQQQQHQQQGMLGGQISSVQHPPVTIPGQNTAQPNMMHSLNPLQQQQQQQHVFKQDLLQQQQMKRIQLAQQQQQKLQQASNLVLPLQQQQHQQQQMQEDSKMDIRRMMATKRVQQQQQNQLNQMKVGSPQLTSSPQILQAPSPQLAQQLSPQIDQQHAQGLTTVKVGTPLQAATPPFMTPSPLLPVASPPIEDAEHKAATSAVSSITSSQPIGYNQSTATPVIGTPGISASPFLEFSPSPAQVAGSQDPAPGTPFGQKGLDPLERLLKIVSTISPKALSAGVREMRSVVNLSDKLAASAPGPGCRAAVGEDLAALTKSRQQSRALASTQEGPAAAKKISYVLEQEIRDTNDHLIDTVVDISEDGTEEAASEGKEGLVLTFSYNGLEIPETIHHMAVLSPLRVLVPPTYPKTPPLLMSDNFDPNSNHLLSVVARDSFARAVRLGNYTHPLTIKAMARAWDECARKVVSEAIYGSSGSSNGGPFLSSIGVWENCVAT
Length830
PositionTail
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.03
Grand average of hydropathy-0.801
Instability index81.24
Isoelectric point9.20
Molecular weight92541.31
Publications
PubMed=21551031

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26394
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     500.01|      66|      67|      61|     126|       1
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    4-   53 (71.80/12.54)	.........................MQA.RQTQVQPQ.........QQ...QQ.......QQ...QQQQ........QQQPQQ....QPQHQQQ.....QQQ.PQSSQP....PhvASQQ
   61-  126 (128.57/30.06)	K....QKQP.GLQQQQ..Q..PTS.MVL.KPSGINSQ.........QSLLPQQ.......QQ...QQPQ........QQPPVT....LLQHHQQ.....QQQ.QQQQLP....P..LQQQ
  128-  196 (89.14/17.89)	Q....QQQP.QLAGLS..Q..PQSnMSQ.H......Q.........PSLMQQQ.......QQpymQQQQ........QQPSAQ....AL.HQQQllssgQQMlQQQMLQ....P..KQQQ
  200-  279 (66.83/11.01)	Q....QNQPlGMMQQRavS..EAS.SAS.VDSGQTAQ.........SATIDQQetvwnklQN...LKDK........YLPDMNdlrnMLVARSQ.....QSM.PADQLQ....K..LNHY
  280-  352 (61.05/ 9.23)	KdvlsRMIP.YLSASR..TnlPKE.FRLdKLEAFEKQivsimetfkKRKLPQQ.......QQ...QQ.............QVQ....L...QQQ.....QHQ.QQGMLG....G...QIS
  353-  424 (82.62/15.88)	S....VQHP.PVTIPG..Q..NTA.....QP...NMM.........HSLNPLQ.......QQ...QQQQhvfkqdllQQQQMK....RIQLAQQ.....QQQ.KLQQASnlvlP..LQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      66.41|      10|      15|     465|     474|       2
---------------------------------------------------------------------------
  465-  474 (18.34/ 9.04)	QLTSSPQILQ
  483-  490 (15.36/ 6.08)	QL..SPQIDQ
  540-  549 (16.87/ 7.58)	SITSSQPIGY
  551-  560 (15.85/ 6.57)	QSTATPVIGT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.99|      17|      21|     600|     618|       3
---------------------------------------------------------------------------
  602-  618 (28.27/22.33)	LKIVSTISPK.ALSA...GVR
  620-  640 (20.71/ 7.75)	MRSVVNLSDKlAASApgpGCR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.18|      14|      38|     451|     464|       5
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  451-  464 (25.52/10.65)	QQQNQLNQMKVGSP
  491-  504 (22.69/ 8.55)	QHAQGLTTVKVGTP
  513-  524 (19.96/ 6.52)	MTPSPL..LPVASP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26394 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASNLVLPLQQQQHQQQQMQEDSKMDIRRMMATKRVQQQQQNQLNQMKVGSPQLTSSPQILQAPSPQLAQQLSPQIDQQHAQGLTTVKVGTPLQAATPPFMTPSPLLPVASPPIEDAEHKAATSAVSSITSSQP
2) GMLGGQISSVQHPPVTIPGQNTAQPNMMHSLNPLQQQQQQ
3) MRMMQARQTQVQPQQQQQQQQQQQQQQPQQQPQHQQQQQQPQSSQPPHVASQQMLYRMHMKQKQPGLQQQQQPTSMVLKPSGINSQQSLLPQQQQQQPQQQPPVTLLQHHQQQQQQQQQLPPLQQQQQQQQPQLAGLSQPQSNMSQHQPSLMQQQQQPYMQQQQQQPSAQALHQQQLLSSGQQMLQQQMLQPKQQQALPQQNQPLGMMQQRAVSEASSASVDSGQTAQSATIDQQET
4) QNLKDKYLPDMNDLRNMLVARSQQSMPADQLQKLN
414
345
1
243
546
384
237
277










Molecular Recognition Features






MoRF SequenceStartStop




1) QQQQQQQQPQQQPQHQ
2) SQPPHVASQQMLYRMHMKQK
20
44
35
63