<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26387

Description Uncharacterized protein
SequenceMMQARQTQVQPQQQQQQQQQQQQQQQQQPQQQPQHQQQQQQPQSSQPPHVASQQMLYRMHMKQKQPGLQQQQQPTSMVLKPSGINSQQGLLPQQQQQQQQPQQQPPVTLLQHHQQQQQQQQQQLPPLQQQQQQQQPQLAGLSQPQSNMSQHQPSLMQQQQQPYMQQQQQQPSAQALHQQQLLSNGQQMLQQQMLQPKQQQALPQQNQPLGMMQQRAVSEASSASVDSGQTAQSATIDQQETVWNKLQNLKDKYLPDMNDLRNMLVARSQQSMPADQLQKLNHYKDVLSRMIPYLSASRTNLPKEFRLDKLEAFEKQIVSIMETFKKRKLPQQQQQQQVQLQQQQHQQQGMLGGQISSVQHPPVTIPGQNTAQPNMMHSLNPLQQQQQQQQHVFKQDLLQQQQMKRIQLAQQQQQKLQQASNLVLPLQQQQHQQQQMQEDSKMDIRRMMATKRVQQQQQNQLNQMKVGSPQLTSSPQILQAPSPQLAQQLSPQIDQQHAQGLTTVKVGTPLQAATPPFMTPSPLLPVASPPIEDAEHKAATSAVSSITSSQPIGYNQSTATPVIGTPGISASPFLEFSPSPAQVAGSQDPAPGTPFGQKGLDPLERLLKIVSTMSPKALSAGVREMRSVVNLSDKLAASAPGPGCRAAVGEDLAALTKSRQQSRALASTQEGPAAAKKVKRQLDSIALTLISSDGSVVNSLHKGDEADLESSVTSGWKSQKLEISYVLEQEIRDTNDHLIDTVVDISEDGTEEAASEGKEGLVLTFSYNGLEIPETIHHMAVLSPLRVLVPPTYPKTPPLLMSDNFDPNSNHLLSVVARDSFSRAVRLGNYTHPLTIKAMARAWDECARKVVSEAIYGSSGSSNGGPFLSSIGVWENCVAT
Length880
PositionTail
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.03
Grand average of hydropathy-0.808
Instability index80.53
Isoelectric point8.91
Molecular weight97993.15
Publications
PubMed=21551031

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26387
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     532.68|      69|      69|      62|     130|       1
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   62-  130 (135.97/28.69)	K....QKQP.GLQQQQ..Q..PTSMVL.KPSGINSQ.........QGLLPQQQQ.....QQ..QQPQQQ...PPVT....LLQH...HQ.......Q.....QQQQQQQQLP....P.LQQQ
  132-  200 (100.50/19.14)	Q....QQQP.QLAGLS..Q..P.......QSNMSQH.........QPSLMQQQQ.....QPymQQQQQQ...PSAQ....AL.H...QQ.......QllsngQQMLQQQMLQ....P.KQQQ
  204-  283 (69.37/10.76)	Q....QNQPlGMMQQRavS..EASSAS.VDSGQTAQ.........SATIDQQETvwnklQN..LKDKYL...PDMN....DLRNmlvAR.......S.....QQSMPADQLQ....K.LNHY
  284-  356 (62.71/ 8.96)	KdvlsRMIP.YLSASR..TnlPKEFRLdKLEAFEKQivsimetfkKRKLPQQQQ.....QQ..Q................V..Q...LQ.......Q.....QQHQQQGMLG....G..QIS
  357-  429 (90.77/16.52)	S....VQHP.PVTIPG..Q..NTA....QPNMMHS............LNPLQQQ.....QQ..QQ.QHV...FKQD....LLQQ...QQmkriqlaQ.....QQQQKLQQASnlvlP.LQQQ
  430-  496 (73.35/11.83)	Q....HQQ....QQMQ..E..DSKMDI.RRM.MATK.........R...VQQQQ.....QN..QLNQMKvgsPQLTsspqILQ.............A.....PSPQLAQQLS....PqIDQQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     114.65|      24|      55|     499|     522|       3
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  499-  522 (45.73/21.23)	QGLTTVKVGTPL.QAATPPF.......M..TPSP
  556-  580 (36.62/15.58)	QSTATPVIGTPG.ISASP.F.......LefSPSP
  584-  615 (32.30/12.91)	AGSQDPAPGTPFgQKGLDPLerllkivS..TMSP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.69|      41|     164|     662|     717|       4
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  651-  694 (58.34/33.33)	DLAALTKSRQQSRALastQEGPAAAKKVKRQLDSIALTL..ISSDG
  707-  749 (61.36/43.57)	DLESSVTSGWKSQKL...EISYVLEQEIRDTNDHLIDTVvdISEDG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26387 with Med15 domain of Kingdom Viridiplantae
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