<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26380

Description Uncharacterized protein CDKE-1
SequenceMADGIAKRARPAWLQQYELLGKIGEGTYGLVYLAKSKLVSNRGVKIAIKKFKQSKEGDGVSPTAIREIMLLRECMHENVVKLVDVHINHADMSLYLAFEYAEHDLYEIIRHHREKLLFQINPYTVKSLLWQILNGINYLHSNWIIHRDLKPSNILVMSGDGDEQGLVKIGDFGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGAKHYTCAVDMWAVGCIFAELLTLKPLFQGAEDKTGPNPFQLDQLDKIFKVLGHPTTERWPMLSNLPHWLANRQLIQSRKYDNPGLHTVVNLQPKGLAFDLLSRMLEYDPVKRITAAQALDHEYFRSDPLPGRNALVYGQPGEKVVQYPARPVDSSTDFEGSGSIQNTQMVRNRKRKQAFFSPLQCGGGSSFLMVSTFRGSQMSTSNSLPASAASAAAASATANAVRPMHHQQMPLVGMQRLQTASMGAFNVGAQPAMAGLAANMFVQRGQQLQQVAHHQQQQQQQQQQQHQHHQHQQHQVQKLRSFLRS
Length513
PositionKinase
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.08
Grand average of hydropathy-0.344
Instability index43.96
Isoelectric point9.48
Molecular weight57658.53
Publications
PubMed=21551031

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
cyclin-dependent protein serine/threonine kinase activity	GO:0004693	IBA:GO_Central
RNA polymerase II CTD heptapeptide repeat kinase activity	GO:0008353	IBA:GO_Central

GO - Biological Process
protein phosphorylation	GO:0006468	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26380
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.18|      24|      45|     413|     436|       1
---------------------------------------------------------------------------
  413-  436 (41.17/25.15)	PASAASAAAA.SATANAVRPM.HHQQ
  459-  484 (35.01/20.36)	PAMAGLAANMfVQRGQQLQQVaHHQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.86|      27|     143|      20|      48|       2
---------------------------------------------------------------------------
   20-   48 (41.99/39.36)	LGKIGEgtYGL..VYLAKSKLVSNRGVKIAI
  166-  194 (43.86/33.02)	LVKIGD..FGLarIYQAPLKPLSDNGVVVTI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26380 with CDK8 domain of Kingdom Viridiplantae
Unable to open file!