<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26378

Description Uncharacterized protein
SequenceMASPAAWQQLPGQGSPSQGHWQAGQMQRAVFPGYPAPPLQPYRAPNQLNSTPPGASSPNLPLYQPPSPSGQMGSSPTNATGYAHVRWDASAPPPSIFGARPTSQPASSPLVQPPPYPSNHQWILPGQHPQRPFLYPPTFSLPYQRQELHPSFRPVGDPFQGGAAFGVWGGSGIDLSGSAAHHELPDFHAHKMPAAAAATGEDKSHTAVSDSKSENAFPFEVSEEDAWAAHKTEDGVIYYYNSVTGDSTYEKPAGFKGEAGNVTSQPTPVSCEKLSGTDWSLVTTNDGKKYYYNPKTQATSWQIPAEIVDKGKKDASNAPAALTGGREAKGTSNTPTALDTIKKKLQEYSGGIATVSEPEVAKAGADDTSKDKSKENAEASTSDSSSDSEEEGPTVTKEERVRQFKEMLKEKGVAPFSKWEKELPKILFDPRFKAIAGHTERRSIFEHYVRTRAEEERKEKRAAQKLAVEGFKQLLDEANSSNEFSASTTYENFASIWNQDPRFEALDRKERETLLNERILPLKKAEEERAKAAYASVSSEFQAMLKERNDITSTTRWSKIKDLVRHDPRCKAVKHEDRENIFNSYIAELRAAEQNKLRERERVMRKRKERTEQELDRVRAKARRKDAVTGYQALLTEKIKDAEASWTESKSKLEKDALGRATNPELDAADRERLFRDHVKDLYERCEKEYRALLAEAITLDAASKLAEDGKDILGVWSDAKDMLNSDHRYNRMPRRARETWWHRHAQELQRRLKPNDRDKEKDDPKARASGSSSKRQR
Length778
PositionUnknown
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.08
Grand average of hydropathy-0.984
Instability index45.32
Isoelectric point8.47
Molecular weight87056.60
Publications
PubMed=21551031

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26378
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|      99.99|      16|      16|     427|     442|       1
---------------------------------------------------------------------------
  427-  442 (27.92/20.44)	LFDP..RFKAIAGHTERR
  444-  461 (16.30/ 8.14)	IFEHyvRTRAEEERKEKR
  500-  512 (17.70/ 9.62)	..DP..RFEAL.DRKERE
  514-  529 (19.32/11.34)	LLNE..RILPLKKAEEER
  566-  579 (18.75/10.73)	.HDP..RCKAVK.HEDRE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     139.96|      23|      23|      47|      69|       2
---------------------------------------------------------------------------
   47-   69 (44.54/21.63)	QLNSTPPGASSP.NLP.LY..QPPS.PS
   71-   95 (31.48/13.04)	QMGSSPTNATGY.AHV.RWdaSAPP.PS
   96-  118 (28.64/11.16)	IF.GARP.TSQPaSSP.LV..QPPPyPS
  119-  140 (35.29/15.55)	NHQWILPG.QHP.QRPfLY...PPT.FS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     138.13|      40|      51|     218|     266|       3
---------------------------------------------------------------------------
  218-  258 (71.04/59.45)	PFE.VSEEDaWAAHKTEDGVIYYYNSVTGDSTYEKPAGF..KGE
  270-  312 (67.09/36.14)	SCEkLSGTD.WSLVTTNDGKKYYYNPKTQATSWQIPAEIvdKGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     143.46|      43|      51|     611|     653|       4
---------------------------------------------------------------------------
  540-  626 (30.84/16.74)	...EFQAMLKER.N.DITSttRWSKIKD..lvrhdprckavkhedrenifnsyiaelraaeqnklrerervmrkrkerTEQELDRV.RAKARR...KD
  627-  681 (54.90/36.08)	AVTGYQALLTEKIK.DAEA..SWTESKSKL........................................ekdalgraTNPELDAAdRERLFRdhvKD
  686-  709 (22.96/10.40)	CEKEYRALLAEAITlDAA.........SKL................................................AED.................
  710-  759 (34.76/19.89)	...G.........K.DILG..VWSDAKDML............................nsdhrynrmprraretwwhrHAQELQR..RLKPND...RD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.21|      14|      99|     378|     391|       5
---------------------------------------------------------------------------
  362-  375 (22.87/12.92)	KAGADDTSKDKSKE
  378-  391 (22.35/12.46)	EASTSDSSSDSEEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.35|      14|      50|     151|     165|       6
---------------------------------------------------------------------------
  151-  164 (26.33/19.63)	SFRPVGDPFQGGAA
  167-  180 (25.02/11.86)	VWGGSGIDLSGSAA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26378 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAHHELPDFHAHKMPAAAAATGEDKSHTAVSDSKSENA
2) IATVSEPEVAKAGADDTSKDKSKENAEASTSDSSSDSEEEGPTVTKEERVRQF
3) MASPAAWQQLPGQGSPSQGHWQAGQMQRAVFPGYPAPPLQPYRAPNQLNSTPPGASSPNLPLYQPPSPSGQMGSSPTNATGYAHVRW
4) RHAQELQRRLKPNDRDKEKDDPKARASGSSSKRQR
5) SAPPPSIFGARPTSQPASSPLVQPPPYPSNHQWILPGQHP
6) WQIPAEIVDKGKKDASNAPAALTGGREAKGTSNTPTALDTIKK
179
352
1
744
90
301
216
404
87
778
129
343










Molecular Recognition Features






MoRF SequenceStartStop




1) GHWQAGQMQRAVFPGY
2) GKKYYYN
3) MASPAAWQQLP
4) WWHRHAQE
5) YAHVRW
19
287
1
741
82
34
293
11
748
87