<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26374

Description Uncharacterized protein
SequenceMSSTAPAVGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPSNTVFDAKRLIGRKFSDPSVQADMKLWPFKVIAGPSDKPMIVVTYKNEQKQFSAEEISSMVLTKMKEIAEVFVGKSVKDAVVTVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDKKSSSTGEKNILIFDLGGGTFDVSTLTIDQGVFEVKATAGDTHLGGEDFDNRMVNFFAQEFKRKYRKDISDNARALRRLRTACERAKRTLSSTSQTTINVESLYEGIDFNASITRARFEELCMDLFRKCMEPVEKCLKDSKMDKGSIHDVVLVGGSTRIPKVQQLLQDFFNGKDLCKSINPDEAVAYGAAVQAAILSGVEHEKVQEVVLLDVAPLSLGLETAGGVMTTLIPRNTTIPARKEQIFSTYSDNQPGVLIQVFEGERARTRDNNLLGKFELSGIPPAPRGVPQITVAFDMDANGILNVSAEDKTTGKKNKIVITNDKGRLSKEEISKLVQEAEKFKAEDDEARKKIDARNALENYAYNMRNTLRDDNVAGKLDPADKKKIEEAINKTIEWLDANQLAEVEELEDKQKELEGICNPVIARMYQGGGGGGGAGGAAPGGGAGFGGGSGGSDGPGPKIEEVD
Length653
PositionUnknown
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.06
Grand average of hydropathy-0.370
Instability index34.40
Isoelectric point5.34
Molecular weight70855.32
Publications
PubMed=21551031

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IBA:GO_Central
ATPase activity	GO:0016887	IBA:GO_Central
heat shock protein binding	GO:0031072	IBA:GO_Central
misfolded protein binding	GO:0051787	IBA:GO_Central
protein folding chaperone	GO:0044183	IBA:GO_Central
unfolded protein binding	GO:0051082	IBA:GO_Central

GO - Biological Process
cellular response to unfolded protein	GO:0034620	IBA:GO_Central
chaperone cofactor-dependent protein refolding	GO:0051085	IBA:GO_Central
protein refolding	GO:0042026	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26374
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.75|      11|      16|     618|     630|       1
---------------------------------------------------------------------------
  618-  630 (20.67/13.21)	GGGGGGAGGaaPG
  636-  646 (25.08/10.84)	GGGSGGSDG..PG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.14|      15|      16|     156|     170|       2
---------------------------------------------------------------------------
  156-  170 (25.51/14.99)	QRQATKDAGVIA.GLN
  173-  188 (18.64/ 9.06)	RIINEPTAAAIAyGLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     103.64|      23|      26|      31|      53|       3
---------------------------------------------------------------------------
   11-   29 (28.32/13.53)	..DLG..TTYSCVGVWQHDRVEI
   31-   53 (41.06/22.22)	ANDQGNRTTPSYVAFTDTERLIG
   55-   76 (34.26/17.58)	AAKNQVALNPSNTVF.DAKRLIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.65|      24|     397|      98|     125|       4
---------------------------------------------------------------------------
   98-  125 (32.90/37.74)	GPSDKpmIVVTykNEQKQFSAEEISSMV
  500-  523 (40.74/28.27)	GKKNK..IVIT..NDKGRLSKEEISKLV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26374 with Med37 domain of Kingdom Viridiplantae
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