<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26373

Description Uncharacterized protein
SequenceMAKEGPAVGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDSSVQSDIKLWPFKVTPGAAEKPMITVHYKGEEKTFAAEEISSMVLTKMKEIAEAFLGATVKNAVITVPAYFNDSQRQATKDAGVISGMNIMRIINEPTAAAIAYGLDKKATSAGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFDGIDFNTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSIHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVSEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDKIAGKLEADDKKKIEEAVEQAIQWLDQNQLGEADEFEDKMKELESICNPIIARMYQGAGGAPGDMPMPGAGAYPGGGGGGGGGAGGAGPKIEEVD
Length655
PositionUnknown
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.06
Grand average of hydropathy-0.410
Instability index35.92
Isoelectric point5.21
Molecular weight71433.14
Publications
PubMed=21551031

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IBA:GO_Central
ATPase activity	GO:0016887	IBA:GO_Central
heat shock protein binding	GO:0031072	IBA:GO_Central
misfolded protein binding	GO:0051787	IBA:GO_Central
protein folding chaperone	GO:0044183	IBA:GO_Central
unfolded protein binding	GO:0051082	IBA:GO_Central

GO - Biological Process
cellular response to unfolded protein	GO:0034620	IBA:GO_Central
chaperone cofactor-dependent protein refolding	GO:0051085	IBA:GO_Central
protein refolding	GO:0042026	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26373
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.00|      18|      21|      36|      53|       1
---------------------------------------------------------------------------
   14-   31 (19.07/11.57)	....TTYSCVGVWQHDRveIIA
   36-   53 (32.65/25.43)	NR..TTPSYVAFTDTER..LIG
   58-   76 (24.28/16.89)	NQvaMNPINTVF.DAKR..LIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.28|      25|      26|     567|     591|       2
---------------------------------------------------------------------------
  567-  591 (42.24/24.65)	EADDK.KKIEEAVEQAIQWLDQNQLG
  595-  620 (40.04/23.05)	EFEDKmKELESICNPIIARMYQGAGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.04|      12|      18|     515|     526|       3
---------------------------------------------------------------------------
  515-  526 (19.85/14.91)	SKDEIEKMVSEA
  531-  542 (20.19/15.29)	SEDEEHKKKVEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.55|      18|      18|     110|     127|       4
---------------------------------------------------------------------------
  110-  127 (27.72/17.91)	KGEEKTFAAEEISSMVLT
  130-  147 (26.83/17.11)	KEIAEAFLGATVKNAVIT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.92|      13|      31|     183|     196|       7
---------------------------------------------------------------------------
  183-  196 (18.69/15.64)	IAYGL.DKKATsAGE
  216-  229 (18.23/ 9.66)	IEEGIfEVKAT.AGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.84|      14|      41|     339|     354|       8
---------------------------------------------------------------------------
  339-  354 (18.82/17.74)	VLVGGSTRipKVQQLL
  383-  396 (24.01/14.31)	ILSGEGNE..KVQDLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26373 with Med37 domain of Kingdom Viridiplantae
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