<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26366

Description Uncharacterized protein PFT1A-2
SequenceMATSSSAGPPSSGSGVTAQQPQAQYLVLAVEATAALGPSWPLLRSEILVPDWYFRAFYGQDGNVQKDNGATLEMALVVFRGHDSYSGCLLQRSGWTPSLELFQLWLSSIDFSGGGFGEVAVAEGLAEALVMCCPTTQPPSNQACQRHCILVAASNPHRLQTPVPHPPLSTGADAKPDHWWLADAEAVARAFSQCHISLSVVCPRQLPSLKNLYSVAKQNPRASDPSNEIAKHTQHLVLISESFLEARNCLRRVTQAPALAAVSMPPSPTSVKVEQQAAAPLTVQTTQPVPATAVPSVSTGTVPTTSGRQSQIMSNGNIPTSTVKIEHVSTSGPLSYGSPPMANTSMAAVSLPIQSSGATSAMSQDVLRPPLGSDSSTAVQDFKSINTNSLQSHRPVPAASVLNQIRQGAGSAAVSSILSAGSLAVGQVGLGITQPVSQPASMAHGLSGDAGSASLGPVQGNANTSSILPSNAPAGMMQPASMPSGLPPVASTVGMAQSLQAANPLVVGGQSVQGAGLGMPHSSIAAPSNSVGSAPNAGVLLPMSQPGQNPATGNAGVSHLVSNAVATTPPQQPANTKYTKLWQGTLAGQRHGKPVPICSLEGYRQISSPETLAADWPLTMQIVRLIPQDYMSKEYQGKAELLVFRPLNQHGFLQQLADKKLCAVIQLPSQTLLLASADKPQRMIGMLFPGDTVVFKPQGQNPQPGAPNFSHGGFPPTAQQSKPPQMMPGGSQMPMAGSGGTQIPGQSYLL
Length750
PositionUnknown
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.05
Grand average of hydropathy-0.100
Instability index54.15
Isoelectric point8.47
Molecular weight77650.28
Publications
PubMed=21551031

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26366
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.97|      16|      20|     536|     551|       1
---------------------------------------------------------------------------
  474-  490 (24.23/ 8.52)	AGMMQPASMPsGLPPV..A
  537-  554 (23.74/ 8.19)	AGVLLPMSQP.GQNPAtgN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.81|      19|      20|     695|     713|       2
---------------------------------------------------------------------------
  695-  713 (41.30/15.83)	FKP...QGQNPQ..PGA...PNFSHGG
  714-  740 (26.51/ 7.61)	FPPtaqQSKPPQmmPGGsqmPMAGSGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     197.72|      39|      50|     268|     306|       3
---------------------------------------------------------------------------
  254-  275 (29.71/ 7.10)	............TQ.......APALA...AVS...MPP.S............PTS.VKVEQ
  276-  327 (54.11/18.28)	QAAAPLTV..QTTQ......PVPATAV.PSVSTGTVPTTSgrqsqimsngniPTStVKIEH
  347-  381 (47.27/15.14)	.AAVSLPI..QSS.........GATSA.MSQDVLRPPLGS............DSS.TAVQD
  383-  427 (39.22/11.46)	KSINTNSL..QSHR......PVPAASVlNQIRQG...AGS....aavssilsAGS.LAVGQ
  500-  535 (27.41/ 6.04)	QAANPLVVggQSVQgaglgmPHSSIAA.PSNSVGSAP........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.85|      24|      61|     605|     629|       4
---------------------------------------------------------------------------
  605-  629 (40.41/26.44)	QISSPETL..AADWPLTMqIVRLIPQD
  666-  691 (40.45/22.04)	QLPSQTLLlaSADKPQRM.IGMLFPGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.51|      23|     154|       9|      34|       7
---------------------------------------------------------------------------
    9-   34 (28.15/29.25)	PPSSgSGVTAqQPQAQYLVLAvEATA
  166-  188 (45.36/28.01)	PPLS.TGADA.KPDHWWLADA.EAVA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26366 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) APNAGVLLPMSQPGQNPATGNAGVSHLVSNAVATTPPQQPANTKYTKLWQ
2) ATSAMSQDVLRPPLGSDSSTAVQDFKSINTNSLQSHRPVPAASVLNQI
3) PALAAVSMPPSPTSVKVEQQAAAPLTVQTTQPVPATAVPSVSTGTVPTTSGRQSQIMSNGNIPTSTVKIEHVSTSGPLSYGSPPM
4) VFKPQGQNPQPGAPNFSHGGFPPTAQQSKPPQMMPGGSQMPMAGSGGTQ
5) VSQPASMAHGLSGDAGSASLGPVQGNANTSSILPSNAPAGMMQPASMPSGLPPVASTVG
534
358
257
694
436
583
405
341
742
494










Molecular Recognition Features






MoRF SequenceStartStop




NANANA