<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26364

Description Uncharacterized protein
SequenceMQHAGDLKERCTGILLPLVAVALQLVERVLDPIPLTLVSVSQQQQGTRTPQLTPYRLKCEKEPLNPRLGPPDFYFPAPDCPEESLTRDTCTNGYKEAIEGIEEARETTWTLATNNALWAKENISRYKESLRKRLRAVTNALVRKRKAGQVYDVPLVGALLAKAGQFPERHTYGEDYRKKWIEDLSQRKRLSLLAEHVPHGFHRRTLFEALVKQNVPFLRATWFIKISYLNQVRPASSAGADKSHGKRLEQWTRDVLDYAQSVLDEICSNASRAALAQAYDSVQSVETDLDGHAKWHYIVRLVQWQYAEGLLQQSHVVEWALKQIQEKESLDGLELLLPVLLEFMDSLSLSQVHVRMLVDICQHWLRQLGVSNVLPSPEEQPQQYRIVVTFVEIMRYLLVAVPDTFVAFDCFPLLPCVTTLEGMEIVKDGDPKADTTKGNGRPGNLCPYREVYIMEVVDSIQKRASSLTKAVNPGVLRNNDGKVIQALDKSLAAGDLLSAFQAVFDSDFSGYDQLPGEWKTSSSNLPFLSGMLNNVNLSDLFAVRYLCEWAVCDFRDTRQASSIKVSTGIKDLSRIYTAASVLLLKKDFPPGSHAKKARVKGASDSKLKRSPMHEIIVAWIDQHDSRKGESMEKMQLLLYELVRRGIFHPDAYVRQLIVEGLLERRESPSDISRAARHRRVLRYLPGLPTLDLDDTKDTDDIPENARLYRNERRLALHGFHSDDKIAKDRRLKDRTYSSEVKVPMSGSFVTNTLDRKQVSRKPMKLLEVKQAVCAYLQIPDTLAGQQKFCAGPVGILKRVAGSSIGDTHGCEECNGSKRLKTGESKGTGFIADPEDSWWIKKVPKVSDPVKLEASIKPPKQGVRGRPKTVRKTQSLAQLHSARVDGGQGASSSHSFDSKVHCPYHRPAASTKLSLNDLRPKNDFRSIGSALKQLTVSEKFNFSSWLDRTIRSLLGEGTANKTGPTARCQLSDEQFGAVVYMLDMVFDYNVLVRLLLWLLPMAAGTSGMSARAPVNNKETCGIGEAAILSCLRRYELVITSLNLLPEVLTVGIQCASSVIGTIPSGRSQILIYVSELLNKYKGLMTVQSWQKTWRGSCDQKVAMELEALKVGDSESALGFINTVGEDRDDPIPQRLNSRLARVGASMKDSVQKALGEAVSQIVSKERELQTANFAIKDAVAEKVEEYSHRVVTGLLEAIKQNGTAQTDSGLVNAAVSALVSSASSSAANAHEVLTANNAGPDISLRCARRILQLHVRCLRLLKDGLDDRQSRVLDVSLASEASTIVAGHFVHIPGRAPRSQFHLSPETPELGTLGNDFAAGQNVITSGRAASATALVVMAVVHGVLSLERLVTVLKIRDGLEALHLPKLFGSSNGLSRGVAMGSTLKSDEVHIHWFRILIGDCKAIAGGLVADILGDATLVALARTQRLLPLNLVFPMAYAMFCGLLRRQVLSRMSNASRDDSILQSLSVAVADIVKHEPFREVCLQDTRALYVLLSSDGGSSDYAALLDEQGFDARLKVEAMLPFSGRLFLHSILDGVLPSSMQWQDDEAWVKVRHVHDPKHAQQQMVLILDELQPATFHWQWLELRLHLNELVFVEKIEAHNSAVKAMQASVGASDQLYECEKVFTENVLTNVLFRPDAGALYSEVLHSLGKPLEEYIIKLVKWSLQGVDVLYGKKSLRQRLEQTKGYIRPTSALKSWGWQPPWSVVEAASPEEGEVSQDNASAAGGSSRDDALSLHFAIEKALADLVLPCLARSLNDTCSGFAFDLVSQMAELEQQVTLLTRSSAKFSVAPSTADGPAAKNQRRGARSGLETASPSVRRRPPEASAVSAAALQSSMWLRLQFLLPLLRIIYCDRENMRLTLAPVLLRLLGTRVVYESAESFGIHQPESSMLNKGQWNAELASMAAAASAGEELFDRLLSVLHALLSNTWAVWLKPRGRAAKPPREVPPFEREAAEKLQTELDHMQLPMSLRMRLQAAMPVFPPGPTFSLSAAPPQVPQSAFTALQANLSPSLHLSHSQKLGADLKSKPSPSLDTETGMDPWLLLEDGTGLPATVGSANSSTTADGSTLKACPWLKGAVRVRRTELTHLGSVDSDT
Length2096
PositionKinase
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.06
Grand average of hydropathy-0.201
Instability index42.52
Isoelectric point8.50
Molecular weight231270.26
Publications
PubMed=21551031

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26364
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.15|      19|      25|    1729|    1747|       1
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 1729- 1747 (30.64/20.96)	SRDDALS.LHFAIEKALADL
 1755- 1774 (28.51/18.92)	SLNDTCSgFAFDLVSQMAEL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.61|      24|     183|     337|     364|       2
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  337-  364 (35.86/34.51)	LPVLLEFMDSLSLSQVH.VRMLvdiCQhW
  525-  549 (41.75/25.51)	LPFLSGMLNNVNLSDLFaVRYL...CE.W
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.12|      21|     184|    1045|    1087|       3
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 1045- 1065 (36.52/56.75)	EVLTVG.IQCASSVIGTIPSGR
 1105- 1126 (30.60/ 7.04)	EALKVGdSESALGFINTVGEDR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.47|      29|      29|    2015|    2043|       4
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 2015- 2043 (52.33/29.61)	LSHSQKLGADLKS.KPSPSLDTET.GMDPWL
 2045- 2075 (43.13/23.09)	LEDGTGLPATVGSaNSSTTADGSTlKACPWL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.77|      23|      28|     660|     687|       5
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  662-  684 (38.98/31.89)	LERRESPSDISRAARHRRVLRYL
  692-  714 (39.79/16.24)	LDDTKDTDDIPENARLYRNERRL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.67|      33|      53|     844|     878|       6
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  844-  878 (52.13/40.84)	KVSDPV.KLEASIKPPKQGVrgRPKT.VRKTQS.LAQL
  898-  933 (46.54/29.14)	KVHCPYhRPAASTKLSLNDL..RPKNdFRSIGSaLKQL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.52|      29|     185|    1448|    1526|       7
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 1136- 1166 (43.77/ 8.32)	SRLArvGASMKDSVQKALGEAVSQIVSKE..RE
 1451- 1481 (44.75/108.34)	SRMS..NASRDDSILQSLSVAVADIVKHEpfRE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.99|      28|      46|     257|     286|      11
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  257-  286 (40.10/31.93)	DYAQSVLDEicSNASRAALAQAY..DSVQSVE
  305-  334 (42.89/26.46)	QYAEGLLQQ..SHVVEWALKQIQekESLDGLE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.91|      23|      30|     423|     445|      12
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  423-  445 (40.78/27.74)	MEIVKDGDPKADTTKGNGRPGNL
  454-  476 (37.12/24.49)	MEVVDSIQKRASSLTKAVNPGVL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.26|      11|      30|    1285|    1295|      13
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 1285- 1295 (22.38/14.21)	AGHFVHIPGRA
 1318- 1328 (19.88/11.75)	AGQNVITSGRA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.74|      15|      30|    1966|    1980|      14
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 1966- 1980 (28.49/17.63)	QLPMSLRMRLQAAM.P
 1996- 2011 (22.25/12.01)	QVPQSAFTALQANLsP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.08|      21|      31|     553|     575|      15
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  553-  575 (26.38/28.07)	DFRDTRQASSIKVStGIKDlSRI
  587-  607 (36.71/26.44)	DFPPGSHAKKARVK.GASD.SKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.41|      11|     270|     957|     967|      16
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  957-  967 (22.65/13.30)	TANKTGP..TARC
 1233- 1245 (17.76/ 8.76)	TANNAGPdiSLRC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.36|      31|    1358|       5|      38|      18
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    5-   38 (47.14/41.67)	GDLKERCTGILLPLVA....VALQLVERVLdpiPLTLV
 1399- 1433 (47.22/31.86)	GDCKAIAGGLVADILGdatlVALARTQRLL...PLNLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.81|      14|    1358|     291|     304|      20
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  291-  304 (29.42/20.62)	GHAKWHYIVRLVQW
 1651- 1664 (26.39/17.68)	GKPLEEYIIKLVKW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     161.11|      51|      55|    1826|    1876|      21
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 1826- 1876 (86.62/49.95)	SAVSAAALQ..SSMWLRLQFLLPLLRIIYCDR..ENMRLTLAPVLLRLL.GTRVVY
 1878- 1933 (74.49/41.91)	SAESFGIHQpeSSMLNKGQWNAELASMAAAASagEELFDRLLSVLHALLsNTWAVW
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.72|      28|     614|     137|     168|      24
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  137-  168 (44.05/36.93)	VTNALVRK...RKAGQVYDV.PLVGALLakagQFPE
  749-  780 (41.67/25.18)	VTNTLDRKqvsRKPMKLLEVkQAVCAYL....QIPD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26364 with Med12 domain of Kingdom Viridiplantae
Unable to open file!