<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26362

Description Uncharacterized protein
SequenceMDKWKSFFQSSGSDIWTVIDRAITIAAVEQPAELRARRDKFTEKMFCPTAHLTGLCECDDGEGEEEENGGGAMSRSDGGDGEEDEDEDEEDDVVENKLVVSGGGALREDEEDLEEEEEVEVVDEEEDQEEEHDDQDDNADQEQSRNRRKSKADCSYMDVEALTDEMEEESRRIKEINRIKNQISHFADEEDYLCEALERLESMHISFEALKATEIGRPVNNLRKHPSLRVRSIVKRLVSGWKTLAEEWTKSAEHFAGGTNATGHFDNNYGLPSPPVDEGELLAAGTAPLEVNKLFDFIEDDMSAGSGDMNEKPRRGSSGDWVRGIYEDAHSPEETKPAAAVSRKTGESEADRKNKQQVSVSRKDSSKNSDSKRSGERESSRAKVSTSQQQNGFRGSQAGGAVAAAANGKHSSGSGSVAAKQQRPDDQRHRAATSNTSRSMKPGVASVSKPKSSSTPLPSASKRSVDERIQSCKMSSSSKAGGSTDKLAAAKRKLHEGYKQAEHAKKQRTVQVMELTDLPKGKGGPKAAKASASSKLHHAQHNNRYNSIHGRRLDQVFGGLGNGSAPSLWSVSGTQLERQQWRPAANSDDEDEGPTCSSSFRSEEEQATKRVRQDENGDENVDEEEEMIRVQAMVGMDTTLDYEDEEDEYDKVAVGREGAGDRLYTSDVKASFDSLSVLSGASFMARDDLASRKAAAADRLAEAREAKINGTTPDLHRTEDLHRRSSSSRPKSSGTRTSDSSDKRKNESRDDRPQKKVRFAVEEENQKTRRTPRDDGGHRQRAGIDRYRNVPHHVRHPEKYTHYTLDWGEEGNSNNVQAWQSTMAAINSAKNEGEEEQPFELPQHVPFVPRANKERAGSSKPGGSTKDSTTPSGSATSVSFAARGLEDEGVAMEENAQPSSKNQKSRSYRSRITEE
Length915
PositionUnknown
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.04
Grand average of hydropathy-1.145
Instability index60.59
Isoelectric point5.20
Molecular weight100983.26
Publications
PubMed=21551031

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26362
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     204.26|      40|      41|     467|     506|       1
---------------------------------------------------------------------------
  335-  370 (27.40/10.98)	.........TKPAAAVSRK..TGESEADRKNKqqvsvSR.KDSS..KNSD
  396-  438 (32.47/14.48)	.SQA.G.GA...VAAAANGKHSSGSGSVAAKQqrpddQR.HRAAtsNTSR
  439-  476 (45.37/23.39)	SMKP.GvASVSKPKSSSTPLPSASKR...SVD.....ER.IQSC..KMSS
  477-  517 (57.32/31.64)	SSKA.G.GSTDKLAAAKRKLHEGYKQAEHAKK.....QRtVQVM..ELTD
  518-  555 (41.70/20.86)	LPKGkG.GPKAAKASASSKLH....HAQHNNR....yNS.IHGR..RLDQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.01|      24|      32|      69|      92|       2
---------------------------------------------------------------------------
   54-   78 (38.40/18.55)	GLCECDDG..................EGEEEE........nGGGAMSRSDG
   79-  109 (29.73/12.58)	GDGEEDED..................EDEEDDvvenklvvsGGGAL.RED.
  617-  659 (21.89/ 7.19)	GDENVDEEeemirvqamvgmdttldyEDEEDE........yDKVAVGREGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.10|      19|      22|     710|     731|       3
---------------------------------------------------------------------------
  710-  730 (29.84/21.29)	GT.TPDlhRTEDLHRRSSSSRP
  734-  753 (29.26/10.40)	GTrTSD..SSDKRKNESRDDRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     102.59|      20|      20|     168|     187|       6
---------------------------------------------------------------------------
  168-  187 (30.24/19.88)	EESRRIKEIN.....RIKN.QISHFA
  189-  209 (25.09/15.20)	EEDYLCEALE.....RLESmHISFEA
  214-  238 (19.60/10.21)	EIGRPVNNLRkhpslRVRS.IVKRLV
  239-  256 (27.67/17.54)	SGWKTLAE.E.....WTKS.A.EHFA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26362 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DDMSAGSGDMNEKPRRGSSGDWVRGIYEDAHSPEETKPAAAVSRKTGESEADRKNKQQVSVSRKDSSKNSDSKRSGERESSRAKVSTSQQQNGFRGSQAGGAVAAAANGKHSSGSGSVAAKQQRPDDQRHRAATSNTSRSMKPGVASVSKPKSSSTPLPSASKRSVDERIQSCKMSSSSKAGGSTDKLAAAKRKLHEGYKQAEHAKKQRTVQVMELTDLPKGKGGPKAAKASASSKLHHAQHNNRYNSIHGRRLDQVFGGLGNGSAPSLWSVSGTQLERQQWRPAANSDDEDEGPTCSSSFRSEEEQATKRVRQDENGDENVDEEEEMIRVQAMVGMDTTLDYEDEEDEYDKVAVGREGAGDRLYTSD
2) FAGGTNATGHFDNNYGLPSPPVDEGELLAA
3) LTGLCECDDGEGEEEENGGGAMSRSDGGDGEEDEDEDEEDDVVENKLVVSGGGALREDEEDLEEEEEVEVVDEEEDQEEEHDDQDDNADQEQSRNRRKSKADCSYMDVEALTDEMEEESRRIKE
4) SGASFMARDDLASRKAAAADRLAEAREAKINGTTPDLHRTEDLHRRSSSSRPKSSGTRTSDSSDKRKNESRDDRPQKKVRFAVEEENQKTRRTPRDDGGHRQRAGIDRYRNVPHHVRHPEKYTHYTLDWGEEGNSNNVQAWQSTMAAINSAKNEGEEEQPFELPQHVPFVPRANKERAGSSKPGGSTKDSTTPSGSATSVSFAARGLEDEGVAMEENAQPSSKNQKSRSYRSRITEE
300
255
52
679
667
284
175
915










Molecular Recognition Features






MoRF SequenceStartStop




1) DWVRGIYEDAH
2) KLFDFI
3) KNQKSRSYRSRIT
4) QPFELPQHVPFVPR
5) SFAARGLEDEGVAMEENAQ
6) TDKLAAAKRKLHEGYKQAEH
7) TVQVMEL
8) YTHYTLDW
320
293
901
837
879
484
509
800
330
298
913
850
897
503
515
807