<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26362

Description Uncharacterized protein
SequenceMDKWKSFFQSSGSDIWTVIDRAITIAAVEQPAELRARRDKFTEKMFCPTAHLTGLCECDDGEGEEEENGGGAMSRSDGGDGEEDEDEDEEDDVVENKLVVSGGGALREDEEDLEEEEEVEVVDEEEDQEEEHDDQDDNADQEQSRNRRKSKADCSYMDVEALTDEMEEESRRIKEINRIKNQISHFADEEDYLCEALERLESMHISFEALKATEIGRPVNNLRKHPSLRVRSIVKRLVSGWKTLAEEWTKSAEHFAGGTNATGHFDNNYGLPSPPVDEGELLAAGTAPLEVNKLFDFIEDDMSAGSGDMNEKPRRGSSGDWVRGIYEDAHSPEETKPAAAVSRKTGESEADRKNKQQVSVSRKDSSKNSDSKRSGERESSRAKVSTSQQQNGFRGSQAGGAVAAAANGKHSSGSGSVAAKQQRPDDQRHRAATSNTSRSMKPGVASVSKPKSSSTPLPSASKRSVDERIQSCKMSSSSKAGGSTDKLAAAKRKLHEGYKQAEHAKKQRTVQVMELTDLPKGKGGPKAAKASASSKLHHAQHNNRYNSIHGRRLDQVFGGLGNGSAPSLWSVSGTQLERQQWRPAANSDDEDEGPTCSSSFRSEEEQATKRVRQDENGDENVDEEEEMIRVQAMVGMDTTLDYEDEEDEYDKVAVGREGAGDRLYTSDVKASFDSLSVLSGASFMARDDLASRKAAAADRLAEAREAKINGTTPDLHRTEDLHRRSSSSRPKSSGTRTSDSSDKRKNESRDDRPQKKVRFAVEEENQKTRRTPRDDGGHRQRAGIDRYRNVPHHVRHPEKYTHYTLDWGEEGNSNNVQAWQSTMAAINSAKNEGEEEQPFELPQHVPFVPRANKERAGSSKPGGSTKDSTTPSGSATSVSFAARGLEDEGVAMEENAQPSSKNQKSRSYRSRITEE
Length915
PositionUnknown
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.04
Grand average of hydropathy-1.145
Instability index60.59
Isoelectric point5.20
Molecular weight100983.26
Publications
PubMed=21551031

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26362
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     204.26|      40|      41|     467|     506|       1
---------------------------------------------------------------------------
  335-  370 (27.40/10.98)	.........TKPAAAVSRK..TGESEADRKNKqqvsvSR.KDSS..KNSD
  396-  438 (32.47/14.48)	.SQA.G.GA...VAAAANGKHSSGSGSVAAKQqrpddQR.HRAAtsNTSR
  439-  476 (45.37/23.39)	SMKP.GvASVSKPKSSSTPLPSASKR...SVD.....ER.IQSC..KMSS
  477-  517 (57.32/31.64)	SSKA.G.GSTDKLAAAKRKLHEGYKQAEHAKK.....QRtVQVM..ELTD
  518-  555 (41.70/20.86)	LPKGkG.GPKAAKASASSKLH....HAQHNNR....yNS.IHGR..RLDQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.01|      24|      32|      69|      92|       2
---------------------------------------------------------------------------
   54-   78 (38.40/18.55)	GLCECDDG..................EGEEEE........nGGGAMSRSDG
   79-  109 (29.73/12.58)	GDGEEDED..................EDEEDDvvenklvvsGGGAL.RED.
  617-  659 (21.89/ 7.19)	GDENVDEEeemirvqamvgmdttldyEDEEDE........yDKVAVGREGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.10|      19|      22|     710|     731|       3
---------------------------------------------------------------------------
  710-  730 (29.84/21.29)	GT.TPDlhRTEDLHRRSSSSRP
  734-  753 (29.26/10.40)	GTrTSD..SSDKRKNESRDDRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     102.59|      20|      20|     168|     187|       6
---------------------------------------------------------------------------
  168-  187 (30.24/19.88)	EESRRIKEIN.....RIKN.QISHFA
  189-  209 (25.09/15.20)	EEDYLCEALE.....RLESmHISFEA
  214-  238 (19.60/10.21)	EIGRPVNNLRkhpslRVRS.IVKRLV
  239-  256 (27.67/17.54)	SGWKTLAE.E.....WTKS.A.EHFA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26362 with Med26 domain of Kingdom Viridiplantae
Unable to open file!