<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26361

Description Uncharacterized protein
SequenceMHDLQAILTRITHSIHTNPSSKWGDVLGQFSVVNLELISLVEEIKPILRAFVVYPKNVSAGMAPILPIMLSSKLLPELEAEEMALKEQVLQPMSNLPLHVQTEKLQASLKRRKLWNLNDRSLGSLQKQIELVRSVCDAAEKVISDSRKALGLGARQGLPPLPTIDKAVAAKILEQEKLLHAAANFGEGLRILPEQRNAPVVLPPHIASALASADDGKGAPIIGGMRPTTPQQVRHFISVFKCDLTMFSPLKIIANATMNGAPAAAAALAGFVNSPRPGDLQAQQQQQQQQQQQQQQQLLMQQRNTKVQQLQKHFHQLRQPAPALQQMQVANQAQSAKMQQFSQSHLQMNQQQQHAAQLHQHMHRDGVPQLQQMHIQQHNAQMQGQPQLAQANQMRPHLANYGNAQTSLLSSNMIVLLFSKDSRNRVCKGYSSEEDWEAAILSDRFFRTLCKAAVYMSGNQSAAPLGLPLQQQMPGQTNYTLMNPNQNPLLSPSPNTIHNSLLNQGLMNPNALAFRQQQQQQQQQQQQQQQQQHQHQQQQQHPPPNQ
Length546
PositionHead
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.04
Grand average of hydropathy-0.540
Instability index69.86
Isoelectric point9.65
Molecular weight60955.97
Publications
PubMed=21551031

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26361
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     427.28|      78|     229|     245|     322|       1
---------------------------------------------------------------------------
  197-  236 (40.79/ 9.80)	.................NAPVVLPPHI....ASALAS.AD.............DgkgAPIIGGM.......................RPTTPQQV.RHF........
  245-  322 (142.34/55.08)	TMFSPLKII.......ANATMNGAPAA....AAALAG.FV.............N...SPRPGDLQ.AQQQQQQQQQQQQQQQLLMQQRNTKVQQLQKHFHQLRQPAP
  323-  368 (58.57/17.73)	.................................AL..........................QQMQvANQAQSAKMQQFSQSHLQMNQQQQHAAQLHQHMH..RDGVP
  369-  406 (44.94/11.65)	..............................................................QLQ.QMHIQQHNAQMQGQPQL..AQAN....QMRPHLANYGNAQT
  407-  494 (71.10/23.32)	SLLSSNMIVllfskdsRNRVCKGYSSEedweAAILSDrFFrtlckaavymsgnQ...SAAPLGLP.L....QQQMPGQTNYTLMNPNQN........P...LLSPSP
  496-  538 (69.53/22.62)	TIHNSL..L.......NQGLMN..P.......NALA..F....................R....Q.QQQQQQQQQQQQQQQQHQHQQQ...................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.68|      20|      28|     143|     162|       2
---------------------------------------------------------------------------
  112-  126 (19.80/ 9.03)	....RKLWNLNDR...SLGSLQ
  143-  162 (35.03/21.51)	ISDSRKALGLGAR..QGLPPLP
  172-  193 (26.85/14.80)	ILEQEKLLHAAANfgEGLRILP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26361 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAAALAGFVNSPRPGDLQAQQQQQQQQQQQQQQQLLMQQRNTKVQQLQKHFHQLRQPAPALQQMQVANQAQSAKMQQFSQSHLQMNQQQQHAAQLHQHMHRDGVPQLQQMHIQQHNAQMQGQPQLAQANQMRPH
2) SAAPLGLPLQQQMPGQTNYTLMNPNQNPLLSPSPNTIHNSLLNQGLMNPNALAFRQQQQQQQQQQQQQQQQQHQHQQQQQHPPPNQ
264
461
397
546










Molecular Recognition Features






MoRF SequenceStartStop




1) QQHPPP
539
544