<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26358

Description Uncharacterized protein
SequenceMDKWKSFFQSSGSDIWTVIDRAITIAAVEQPGELRARRDKFTEKMFCPTAHLTGLCECDDGEGEEEENGGGAMSRSDGGDGEEDEDEDEEDDVAENKLVVSGGGALREDEEDLEEEEEVEVVDEEEDQEEEHDDQDDNADQEQSRNRRKSKADCSYMDVEALTDEMEEESRRIKEINRIKNQISHFADEEDYLCEALERLESMHISFEALKATEIGRPVNNLRKHPSLRVRSIVKRLVSGWKTLAEEWTKSAEHFAGGTNATGHFDNNYGLPSPPVDEGELLAAGTAPLEVNKLFDFIEDDMSAGSGDMNEKPRRGSSGDWVRGIYEDAHSPEETKPAAAVSRKTGESEADRKNKHQVSVSRKDSSKNSDSKRSGERESSRAKVPNSQQQNGFRGSQAGGAAAAAANGKHSSGSSSVAAKQQRPDDQRHRAATSNTSRSLKPGVASVSKPKSSSTSLPSSASKRSVDERIQSCKMSSSSKAGGSTDKLAAAKRKLHEGYKQAEHAKKQRTVQVMELTDLPKGKGGPKAAKASGSSKLHHAQHNNRYNSIHGRRLDQVFGGLGNGSAPSLWSVSGTQLERQQWRPAANSDDEDEGPTCSSSFRSEEEQATKRVRQDENGDENVDEEEEMIRVQAMVGMDTTLDYEDEEDEYDKVAVGREGAGDRLYTSDVKASFDSLSVLSGASFMARDDLASRKAAAADRLAEAREAKINGTTPDLHRTGDLYRRTSSSRPKSSGDGTRTSDSSDKRKNESRDDRPQKKVRFAVEEENQKTRRTPRDDGGHRQRAGIDRYRNVPHHVRHPEKYTHYTLDWGEEGNSNNVQAWQSTMAAINSTKNEGEGEQPFELPQHVPFVPRANKERAGSSKPGGSTKDSTTPSGSATSVSFAVRGLEDEGVAMEENAQSSSKNQKSRSYRSRITEE
Length918
PositionUnknown
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.05
Grand average of hydropathy-1.148
Instability index58.51
Isoelectric point5.22
Molecular weight101136.29
Publications
PubMed=21551031

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26358
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.35|      21|      21|      61|      81|       1
---------------------------------------------------------------------------
   61-   80 (33.33/14.33)	.....GEGEEE...EN.....GGGAMSRSDGGD
   81-  112 (20.40/ 6.11)	GeedeDEDEEDdvaENklvvsGGGAL.REDEED
  642-  662 (35.63/15.80)	D....YEDEED...EY.....DKVAVGREGAGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     205.34|      40|      41|     385|     425|       2
---------------------------------------------------------------------------
  315-  343 (26.93/ 7.96)	...............RGS.S.GDWV...RGIYEDAHSPEETKPAAAVSR.
  348-  383 (35.32/12.90)	SEADRKN......KHQVSVS.RKDS...SKNSDSKRSGERESSRAK....
  385-  424 (64.18/31.47)	PNSQQQN......GFRGSQA.GGAA...AAAANGKHSSGSSSVAAKQQRP
  471-  510 (42.56/14.81)	QSCKMSS.........SSKA.GGSTdklAAAKRKLHEGYKQAEHAKKQRT
  541-  584 (36.36/11.16)	...QHNNrynsihGRRLDQVfGGLG...NGSAPSLWSVSGTQLERQQWRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.89|      34|      41|     731|     765|       3
---------------------------------------------------------------------------
  731-  765 (53.17/33.91)	PKSSGdGTRTSDSSDKRKNESRDDR.PQKKVRFAVE
  775-  809 (59.72/34.01)	PRDDG.GHRQRAGIDRYRNVPHHVRhPEKYTHYTLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.94|      25|      32|     133|     162|       4
---------------------------------------------------------------------------
  133-  162 (38.18/36.93)	DDQDDNADQEQSRNRRKSK....AD.....CsymdvEAL
  164-  197 (31.76/18.25)	DEMEEESRRIKEINRIKNQishfADeedylC.....EAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      48.71|      10|      18|     604|     613|       5
---------------------------------------------------------------------------
  114-  123 (15.83/ 8.15)	EEEEEVEVVD
  604-  613 (15.92/ 8.23)	EEEQATKRVR
  623-  632 (16.96/ 9.27)	DEEEEMIRVQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.98|      25|     386|     434|     469|       6
---------------------------------------------------------------------------
  444-  469 (34.62/16.06)	VASVSKPKSSSTSLpSSASKRSVDER
  868-  892 (41.36/23.93)	TKDSTTPSGSATSV.SFAVRGLEDEG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26358 with Med26 domain of Kingdom Viridiplantae
Unable to open file!