<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26356

Description Uncharacterized protein PFT1A-1
SequenceMATSSSAGPPSSGSGVTAQQPQAQYLVLAVEATAALGPSWPLLRSEYLDKIARAFYGQDGNVQKDNGATLEMALVVFRGHDSYSGCLLQRSGWTPSLELFQLWLSSIDFSGGGFGEVAVAEGLAEALVMCCPTTQPPSNQACQRHCILVAASNPHRLQTPVPHPPLSTGADAKPDHWWLADAEAVARAFSQCHISLSVVCPRQLPSLKNLYSVAKQNPRASDPSNEIAKHTQHLVLISESFLEARNCLRRVTQAPALAAAVSMPPSPTSVKVEQQAAAPLTVQTTQPVPATAVPSVSTGTVPTTSGRQSQIMSNGNIPTSTVKIEHVSTSGPLSYGSPPMANTSMAAVSLPIQSSGATSAMSQEVLRPPLGSDSSTAVQDFKSINTNTLQSHRPVPAASVLNQIRQGAGSAAVSSILSAGSLAVGQAGMGITQPVSQPASLAHGLSGDAGSASLGPVQGNANTSSILPSNAPAGMMQPASMPSGLPPVASTVGMAQSLQAANPLVVGGQSVQGAGLGMPHSSIAAPSNSVGSAPNAGVLLPMSQPGQNPATGNAGVSHLVSNGVATTPPQQPANTKYTKLWQGTLAGQRHGKPVPICSLEGYRQISSPETLAADWPLTMQIVRLIPQDYMSNREYQGKAELLVFRPLNQHGFLQQLADKKLCAVIQLPSQTLLLASADKPQRMIGMLFPGDTVVFKPQGQNPQPGAPNFSHGGFPPTAQQSKPPQMMPGGSQMPMAGSGGTQIPGQNVHASVMVAITNSISIAAIPLLTSAGRIPKRAIYLAMIIVVLTTSLSLCLEAKLTADVGVSRDFGCVDWSLASREAIKQRSLVPLASHGPTGGARPPQEHQLPRQLRSRSMPRGALLADLQTFERKASSVGAARGYTQAAGRSPISPAFGLSADNFLLYEVVTTNGELAAANECRDPFWALGGVVVAATLKTHPELPLGHRQERAELPGWATSSDLSRYSTFQRSLEPLRRGLTWSTLVDHFFFLRGELRRHLRWEPFSGFQADPARDPLELLLSPLDELGRGCYRVSGMKLREISQVQTSC
Length1048
PositionUnknown
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.05
Grand average of hydropathy-0.110
Instability index49.77
Isoelectric point9.00
Molecular weight110036.97
Publications
PubMed=21551031

Function

Annotated function 
ECO:0000256	RuleBase:RU364145
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central
GO - Biological Function
flavin adenine dinucleotide binding	GO:0050660	IEA:InterPro
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central

Interaction

Binary Interactions











Repeat regions





Repeats
>MDP26356
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     731.96|     142|     142|     331|     472|       1
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  218-  329 (91.95/35.00)	...........................................................PRASDPSNEIA..KHTQ.HLVL..ISE.SFLEA.........................RNCLRRVTQApALAAAVSMPPSPTSV...KVEQqaaA.PLTVqtTQPV...PAtavpSVSTGtVPTTSG.RQSQIMSNGNIPTSTVkIEHVST
  331-  472 (241.80/104.43)	G...PLSY..GSPPMANTSM.AAV...SL.PIQSSGATSAMSQE....VLRP.......PLGSDSSTAVQDFKSIN.TNTL..QSH.RPVPA.........................ASVLNQIRQG.AGSAAVSSILSAGSL...AVGQ...A.GMGI..TQPVSQ.PA....SLAHG.LSGDAG.SASLGPVQGNANTSSI.LPSNAP
  474-  575 (123.93/49.82)	GmmqPASMpsGLPPVASTVG.MAQ...SL...QAA...............NP......lVVGGQS...VQ........................................................G.AGLGMPHSSIAAPSN...SVGS...ApNAGV..LLPMSQ.PG....Q..NP.ATGNAG.VSHLVS.NGVATTPPQ.QPANT.
  576-  650 (68.71/24.23)	......................................................................KYTKLW.QGTLagQRHgKPVPI.........................CS.LEGYRQ..........ISSPETL...AADW...PlTMQI..VRLIPQ................DYM.SNR..EYQGKAELLVF.RPLNQH
  651-  816 (124.43/50.05)	G...FLQ......QLADKKLcAVI...QL.PSQTLLLASADKPQrmigMLFPgdtvvfkPQGQNPQPGAPNFSHGGfPPTA..QQS.KP.P.qmmpggsqmpmagsggtqipgqnvhASVMVAITNS.ISIAAIPLLTSAGRIpkrAIYL...A.MIIV..VLTTSL.SL....CLEAK.LTADVGvSRDFGCVDWS.............
  818-  900 (81.15/30.00)	.................ASR.EAIkqrSLvPLASHGPTGGA.........RP.......P.......................QEH.Q.LPR.........................QLRSRSMPRG.ALLADLQTFERKAS....SVG....A.ARGY..TQAAGRsPI....SPAFG.LSAD..........................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26356 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALAAAVSMPPSPTSVKVEQQAAAPLTVQTTQPVPATAVPSVSTGTVPTTSGRQSQIMSNGNIPTSTVKIEHVSTSGPLSYGSPPMAN
2) APNAGVLLPMSQPGQNPATGNAGVSHLVSNGVATTPPQQPANTKYTKLWQ
3) ATSAMSQEVLRPPLGSDSSTAVQDFKSINTNTLQSHRPVPAASVLNQI
4) FKPQGQNPQPGAPNFSHGGFPPTAQQSKPPQMMPGGSQMPMAGSGGTQ
5) QPVSQPASLAHGLSGDAGSASLGPVQGNANTSSILPSNAPAGMMQPASMPSGLPPVASTVG
256
533
357
695
433
342
582
404
742
493










Molecular Recognition Features






MoRF SequenceStartStop




NANANA