<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26351

Description Uncharacterized protein
SequenceMSNVPPPMSSQAAYPPPMQMRPNQASGPFAQPQRPPQGPPGMYGSAVPFPQQGNAYPGSYQVGNPGQLLQSYPVNAGQTNNGMAQGLHSGVPPPGSRASEWQEHFSPDGRRYYYNKRTKQSSWEKPDELMTPTERADASTVWKEFVTADSRKYYYNKLTRQSTWTMPEEMRVAREQADRGYMGVAKMETAPAPVAQTLTPAATGIPSPAPLAGSGADAAESTEETQQTQQDLEVGISEGKSFSTEEPLISYATKNEAKSAFKELLEAMHVQSDWTWDQAMRVIINDKRYGALKSLGERKQAFNEYLAQRKKLDLEEKRLKQKKAREDFIKMLEESKELTSAMRWSKVVSLFESDPRFHAVDKEREREDLFDDYLLDLERKERDKAREEKKKSRADFRSYLESCDFIKVNSHWRKIQDKLDDDERWSRLDKMDRLEVFQEYIRDLEKEEEEEKKMQKEQIRRKERKNRDEFRSLLEFHKAAGILVARCPWRDYLAKIKEHPAYQAICTNLSGSTPKELFMDVLEELDKLYLEDKAKIKDIMKVGKITVVPTTTYDDFKAALAEAGDLTAISELHIKLAFEDALERLKEKEEKEAKKRRRLAEEFSTLLRSNKTITATSNWEESKPLLQETVEFRAIDDEVVLRKLFDEHVAHLQQKLKEKDRKREKEEKKDKDKDSKDDKDKERKKDKSSKKDRNEDGEPALSKEEKKKDKDRDRDKEKRHRRRHRSASSDDGSDRDDRDEARKSRKHGHEHRRSSRRHGHDSDSDTEAKPKRQKRERRSTEELEDGEILGLHSWSCLFVDRLRGSGFWY
Length809
PositionUnknown
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.07
Grand average of hydropathy-1.212
Instability index55.64
Isoelectric point8.34
Molecular weight94127.30
Publications
PubMed=21551031

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26351
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     177.05|      36|      38|      94|     129|       1
---------------------------------------------------------------------------
   40-   87 (46.71/24.12)	PGMY..GSA.VP..FPQQGNAYpgsYqvgnpgqllqsYPVNAGQTNNGMAQGL
   94-  129 (71.63/40.58)	PGSR..ASE.WQEHFSPDGRRY...Y...........YNKRTKQSSWEKPDEL
  132-  170 (58.72/32.05)	PTERadASTvWKEFVTADSRKY...Y...........YNKLTRQSTWTMPEEM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     198.25|      33|      36|     665|     697|       2
---------------------------------------------------------------------------
  409-  444 (32.14/12.18)	NSHwRKIQDK..LD.DDERWSRL..........DKMDRLEvfqeyiR.............DL
  446-  469 (30.38/11.08)	KEE.EEEK....KM.QKEQIRRK..........E...RKN......RD.....E........
  665-  697 (57.82/28.30)	KEE.KKDKDKDSKD.DKDKERKK..........DKSSKKD......RN.....E......DG
  703-  748 (38.52/16.18)	KEE.KK.KDKDR...DRDKEKRHrrrhrsassdDGSDRDD......RD.....EarksrkHG
  749-  786 (39.39/16.73)	HEH.RRSSRRHGHDsDSDTE.AK..........PKRQKRE......RRsteelE......DG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     356.91|      62|      65|     272|     333|       3
---------------------------------------------------------------------------
  229-  271 (21.76/ 6.82)	....................QQDLEVGISEgKSFSTEE...PLisyatkNEAKSAFKELL............EAM.HVQ......................
  272-  327 (82.39/47.47)	...............SDWTWDQAMRVIIND.KRYGALK...SL......GERKQAFNEYLA..QRKKLD..LEEK.RLK...........QKKAR....ED
  328-  395 (72.97/41.15)	FIKMLE...eskeltSAMRWSKVVSLFESD.PRFHAVD...KE......REREDLFDDYLLdlERKERDkaREEK................KKSR....AD
  470-  555 (66.37/36.73)	FRSLLEfhkaagilvARCPWRDYLAKIKEH.PAYQAICtnlSG......STPKELFMDVLE..ELDKLY..LEDKaKIKdimkvgkitvvPTTTY....DD
  556-  602 (50.33/25.97)	FKAALA.........EAGDLTAISELHI........................KLAFEDAL...ER......LKEK.EEK...........EAKKRrrlaEE
  603-  660 (63.10/34.53)	FSTLLR...snktitATSNWEESKPLLQET.VEFRAID..................DEVVL...RKLFD..EHVA.HLQ...........QKLKE....KD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26351 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AHLQQKLKEKDRKREKEEKKDKDKDSKDDKDKERKKDKSSKKDRNEDGEPALSKEEKKKDKDRDRDKEKRHRRRHRSASSDDGSDRDDRDEARKSRKHGHEHRRSSRRHGHDSDSDTEAKPKRQKRERRSTEELE
2) MSNVPPPMSSQAAYPPPMQMRPNQASGPFAQPQRPPQGPPGMYGSAVPFPQQGNAYPGSYQVGNPGQLLQSYPVNAGQTNNGMAQGLHSGVPPPGSRASEWQEHFSPDGRRYYYNKRTKQSSWEKPDELMTPTERADASTVW
3) WTMPEEMRVAREQADRGYMGVAKMETAPAPVAQTLTPAATGIPSPAPLAGSGADAAESTEETQQTQQDLEVGISEG
650
1
164
784
142
239










Molecular Recognition Features






MoRF SequenceStartStop




NANANA