<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26349

Description Uncharacterized protein
SequenceMASPAAWQQLPGQGSPSQGHWQAGQMQRAVFPGYPAPPLQPYRAPNQLNSTPPGASSPNLPLYQPPSPSGQMGSSPTNGTGYAHVRWDASAPPPSIFGARPTSQPASSPLVQPPPYPSNHQWILPGQHPQRPFLYPPTFSLPYQRQELHPSFRPVGDPFQGGAAFGVWGGSGIDISGSAAHHELPDFHAHKMPAAAAATGEDKSHTAVSDSKSENAFPFEVSEEDAWAAHKTEDGVIYYYNSVTGDSTYEKPAGFKGEAGNVTSQPTPVSCEKLSGTDWSLVTTNDGKKYYYNPKTQATSWQIPAEIVDKGKKDVSNAPAALTGGREAKGTSNTPTALDTIKKKLQEYSGGIATVSEPEVAKAGADDTSKDKSKENAEASTSDSSSDSEEDGPTVTKEERVRQFKEMLKEKGVAPFSKWEKELPKILFDPRFKAIAGHTERRSIFEHYVRTRAEEERKEKRAAQKLAVEGFKQLLDEANSSNGLQEFSASTTYENFASIWNQDPRFEALDRKERETLLNERILPLKKAEEERAKAAYASVSSEFQAMLKERNDITSTTRWSKIKDLVRHDPRCKAVRHEDRENIFNSYIAELRAAEQVVERAAKEKRDEENKLRERERVMRKRKERTEQELDRVRAKARRKDAVTGYQALLTEKIKDAEASWTESKPKLEKDALGRATNPELDAADRERLFRDHVKDLYERCEKEYRALLAEAITLDAASKLAEDGKDILGVWSDAKDMLNSDHRYNRMPRRARETWWHRHAQELQRRLKPNDRDKEKDDPKARASGSSSKRQR
Length794
PositionUnknown
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.08
Grand average of hydropathy-0.993
Instability index45.52
Isoelectric point8.29
Molecular weight88933.66
Publications
PubMed=21551031

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26349
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.65|      21|      23|      32|      52|       1
---------------------------------------------------------------------------
   23-   43 (37.78/17.50)	AGQMQRAVFPGY.P.AP..PL.QPYR
   44-   67 (29.65/12.11)	APNQLNSTPPGA.S.SPnlPLyQPPS
  141-  163 (23.22/ 7.84)	LPYQRQELHPSFrPvGD..PF.QGGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     364.50|      58|      58|     647|     704|       2
---------------------------------------------------------------------------
  404-  454 (67.27/33.42)	.................FKEMLKEKGV.A..PFSK..............WEKELPKILFDPRFKAIAGH...TE...............RRSIFEHYVRTRA......E
  455-  526 (45.40/20.33)	EERK.ekraaqklavegFKQLLDEANS.S..NGLQefsasttyenfasiWNQD.PRFE..ALDR........KE...............RETLLNERILPL.......K
  527-  600 (60.15/29.16)	KAEEerakaayasvsseFQAMLKER.N.DitSTTR..............WSKIKDLVRHDPRCKAVRHE....D...............RENIFNSYIAELRaaeqvvE
  601-  642 (50.29/23.26)	RAAK...................EK.R.D..EENK..............LRERERVMRKRK.ER.TEQELDRV................RAKARR...KD.........
  647-  700 (81.71/42.06)	.................YQALLTEKIK.D..AEAS..............WTESKPKLEKDALGRATNPELDAAD...............RERLFRDHVKDLY......E
  701-  767 (59.68/28.88)	RCEK............eYRALLAEAITlD..AASK..............LAED....GKDILGVWS....DAKDmlnsdhrynrmprraRETWWHRHAQELQ......R
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     158.20|      47|      51|     218|     266|       3
---------------------------------------------------------------------------
  218-  266 (79.19/56.38)	PFE.VSEEDaWAAHKTEDGVIYYYNSVTGDSTYEKPAGF..KGEaGNVTSQP
  270-  319 (79.01/48.01)	SCEkLSGTD.WSLVTTNDGKKYYYNPKTQATSWQIPAEIvdKGK.KDVSNAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.04|      18|      21|      92|     110|       4
---------------------------------------------------------------------------
   93-  114 (23.70/14.43)	P.PSIFG.ARPTSQPaSSPLvqpP
  115-  136 (24.33/10.79)	PyPSNHQwILPGQHP.QRPF.lyP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26349 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAHHELPDFHAHKMPAAAAATGEDKSHTAVSDSKSENA
2) ERAAKEKRDEENKLRERERVMRKRKERTEQELDRVR
3) HRHAQELQRRLKPNDRDKEKDDPKARASGSSSKRQR
4) IATVSEPEVAKAGADDTSKDKSKENAEASTSDSSSDSEEDGPTVTKEERVRQF
5) MASPAAWQQLPGQGSPSQGHWQAGQMQRAVFPGYPAPPLQPYRAPNQLNSTPPGASSPNLPLYQPPSPSGQMGSSPTNGTGYAHVRWDASAPPPSIFGARPTSQPASSPLVQPPPYPSNHQWILPGQHP
6) WQIPAEIVDKGKKDVSNAPAALTGGREAKGTSNTPTALDTIKK
179
600
759
352
1
301
216
635
794
404
129
343










Molecular Recognition Features






MoRF SequenceStartStop




1) GHWQAGQMQRAVFPGY
2) GKKYYYN
3) MASPAAWQQL
4) WWHRHAQEL
5) YAHVRW
19
287
1
757
82
34
293
10
765
87