<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26349

Description Uncharacterized protein
SequenceMASPAAWQQLPGQGSPSQGHWQAGQMQRAVFPGYPAPPLQPYRAPNQLNSTPPGASSPNLPLYQPPSPSGQMGSSPTNGTGYAHVRWDASAPPPSIFGARPTSQPASSPLVQPPPYPSNHQWILPGQHPQRPFLYPPTFSLPYQRQELHPSFRPVGDPFQGGAAFGVWGGSGIDISGSAAHHELPDFHAHKMPAAAAATGEDKSHTAVSDSKSENAFPFEVSEEDAWAAHKTEDGVIYYYNSVTGDSTYEKPAGFKGEAGNVTSQPTPVSCEKLSGTDWSLVTTNDGKKYYYNPKTQATSWQIPAEIVDKGKKDVSNAPAALTGGREAKGTSNTPTALDTIKKKLQEYSGGIATVSEPEVAKAGADDTSKDKSKENAEASTSDSSSDSEEDGPTVTKEERVRQFKEMLKEKGVAPFSKWEKELPKILFDPRFKAIAGHTERRSIFEHYVRTRAEEERKEKRAAQKLAVEGFKQLLDEANSSNGLQEFSASTTYENFASIWNQDPRFEALDRKERETLLNERILPLKKAEEERAKAAYASVSSEFQAMLKERNDITSTTRWSKIKDLVRHDPRCKAVRHEDRENIFNSYIAELRAAEQVVERAAKEKRDEENKLRERERVMRKRKERTEQELDRVRAKARRKDAVTGYQALLTEKIKDAEASWTESKPKLEKDALGRATNPELDAADRERLFRDHVKDLYERCEKEYRALLAEAITLDAASKLAEDGKDILGVWSDAKDMLNSDHRYNRMPRRARETWWHRHAQELQRRLKPNDRDKEKDDPKARASGSSSKRQR
Length794
PositionUnknown
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.08
Grand average of hydropathy-0.993
Instability index45.52
Isoelectric point8.29
Molecular weight88933.66
Publications
PubMed=21551031

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26349
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.65|      21|      23|      32|      52|       1
---------------------------------------------------------------------------
   23-   43 (37.78/17.50)	AGQMQRAVFPGY.P.AP..PL.QPYR
   44-   67 (29.65/12.11)	APNQLNSTPPGA.S.SPnlPLyQPPS
  141-  163 (23.22/ 7.84)	LPYQRQELHPSFrPvGD..PF.QGGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     364.50|      58|      58|     647|     704|       2
---------------------------------------------------------------------------
  404-  454 (67.27/33.42)	.................FKEMLKEKGV.A..PFSK..............WEKELPKILFDPRFKAIAGH...TE...............RRSIFEHYVRTRA......E
  455-  526 (45.40/20.33)	EERK.ekraaqklavegFKQLLDEANS.S..NGLQefsasttyenfasiWNQD.PRFE..ALDR........KE...............RETLLNERILPL.......K
  527-  600 (60.15/29.16)	KAEEerakaayasvsseFQAMLKER.N.DitSTTR..............WSKIKDLVRHDPRCKAVRHE....D...............RENIFNSYIAELRaaeqvvE
  601-  642 (50.29/23.26)	RAAK...................EK.R.D..EENK..............LRERERVMRKRK.ER.TEQELDRV................RAKARR...KD.........
  647-  700 (81.71/42.06)	.................YQALLTEKIK.D..AEAS..............WTESKPKLEKDALGRATNPELDAAD...............RERLFRDHVKDLY......E
  701-  767 (59.68/28.88)	RCEK............eYRALLAEAITlD..AASK..............LAED....GKDILGVWS....DAKDmlnsdhrynrmprraRETWWHRHAQELQ......R
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     158.20|      47|      51|     218|     266|       3
---------------------------------------------------------------------------
  218-  266 (79.19/56.38)	PFE.VSEEDaWAAHKTEDGVIYYYNSVTGDSTYEKPAGF..KGEaGNVTSQP
  270-  319 (79.01/48.01)	SCEkLSGTD.WSLVTTNDGKKYYYNPKTQATSWQIPAEIvdKGK.KDVSNAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.04|      18|      21|      92|     110|       4
---------------------------------------------------------------------------
   93-  114 (23.70/14.43)	P.PSIFG.ARPTSQPaSSPLvqpP
  115-  136 (24.33/10.79)	PyPSNHQwILPGQHP.QRPF.lyP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26349 with Med35 domain of Kingdom Viridiplantae
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