<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26348

Description Uncharacterized protein (Fragment)
SequenceRTKQRKKASTKPHPPNEQFQSDYLLLQNQFMDHNQLQAITESLVAMLFIQCGSHAPQADFLLFALRTLARAGLLRSDMFLLAFFRAVAMVESNPVAVTQAQSSPLVSTSGEPSTNILVTPSSAKRASVWLRPLVCNVMGAALEAELRPVASFDMLYLTVQWINDVASGSEGSLKDVTWLDNCLEVLRMLIDERKCRVPFYALLHDQTLLQADYWPENEALLGLFLDLHRRRDRIALHMLMFDHHLQCPTFSTLRSTALTYAGAMGEALYGEEVAASVQRDSLDYEKALRCLKHGLRTNPSADIWRRVLVCAPRHRQQQQPVPPRPGPNTSWTQPGLVFNSEMTCEAVVERIMDLMQPISTGRGFYHIFSFPAFSATSTTESGRWQEWLNFADLFYYFMRRGYLDFLEFIEKLAGAFASGEQSIQRSNHVTWLLAQVFRLETVTQALSEDEDSRKVETAQKILSFHMADRSVDHSNAVSPQAKLLDYVGSSQILRLWALNRTVMEQLVGNRMPEHIQKGKTIDEWWKKVLKGERFLDYANLDDNSMGMVWVLSHTMTQPVADAVMNWMRSNGVGEVLVGNERIAVVHETSPLPIAMLSGLSLHLCMRLIQQIEEQIFAGQMVPSIAMLETYVRLLLVAPQTLFQHHLNGMMQKYQSGAAKAGISLILLELLNYRLMPLYRFHGKLKQLVFDMAKIIIPMKAKRGDHRLFRLAENLGINLVLSMKEVLLIKKEKGATTEFTETLNRIMVVSLAITIKTRGIAEFEQLLVLQTALEQILANSKHTWSEKTMRHFPQTLREVLALRSDGRLLTLQTWQQVETTVLHQCQQLLAGDPAFAMSFVNHSFPPHRPFLCAAAWVLMDCRPENFNCGNLGKALKELSPEDVTSNIYMLVDILLHHMHLQLQHGHSQQDLLLRASATLTYLVWSQEILPFDILLLALLDRDDDIHALRLVSLLLDRKEFQQLRVQNYCRQHGQQEHWLHPGPFQRVEPPQALGNHLAGKERYPVFFDDMALRALPVIHLVVYRLIENDATDTAEHVLTAYSPLLRYHPTRFTFVRDTLAYFYGHLPNKLILRLLSSLDIAKMPVSEAFIRILNTGTPPYDYYVTMLLNLVNNVIPSFTNKPRTSSPTMESFCTTRSTTPGKSPASSTNSADNHKAFYHHQDPGSYCQLVLETCVIELLSLPTPPAQAVAMLVQIAVRVPTPPSQAYASASQSAAPRSPLLPTSPPSACTAESSTPSSTSVSTGQTISPFISPQVIQACGLLLAQLPRQFHDVFYKEVARILKDCWWLKDPKKTPKEMDAAFGYSVWDPSWAVQDGTSSVIGNAAALFHAFTANISFEWLENTHDVVNLQRPMTTVAQLRLAFRMLGPLVPRFVISRPLFAKTLALLFTMLAEVFGRNAQVHDVTEITDLVDFMHHVVMLEAQQAGGKPRPDTLGLCNKAVERLHPDVQHLFQHLTVDPQRSIYAATHPKIAQRPLSCFATTT
Length1482
PositionTail
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.09
Grand average of hydropathy-0.070
Instability index46.44
Isoelectric point7.38
Molecular weight167330.41
Publications
PubMed=21551031

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26348
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.17|      27|     346|     178|     235|       1
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  198-  226 (44.79/59.39)	PFYALLhdQTLLQADYWPENEALLGLFLD
  929-  955 (45.39/ 8.74)	PFDILL..LALLDRDDDIHALRLVSLLLD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     577.97|     187|     760|     467|     676|       2
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  467-  676 (286.51/260.23)	ADRSVDHSNAVSPQAKLLDYVgSSQILRLWALnrtVMEQLVGNRMPEHIQKGKTI..DEWW.KKVLKGERFLD...........YANLDDNS..MGMVWVLSHTMTqpvADAVMNWMRSngVGEVlVGNERiavvhetsPlpiaMLSGLSLHLCMRLIQQ......IEEQIFAGQMVPSIAML.ETYVRLLLVAPQTL......FQHHLnGMMQKYQSGAAKAGISLILLELLNYRLMP
 1230- 1445 (291.46/203.19)	AESSTPSSTSVSTGQTISPFI.SPQVIQACGL...LLAQLPRQFHDVFYKEVARIlkDCWWlKDPKKTPKEMDaafgysvwdpsWAVQDGTSsvIGNAAALFHAFT...ANISFEWLEN..THDV.VNLQR........P....MTTVAQLRLAFRMLGPlvprfvISRPLFAKTLALLFTMLaEVFGRNAQVHDVTEitdlvdFMHHV.VMLEAQQAGGKPRPDTLGLCNKAVERLHP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.39|      40|      98|    1032|    1071|       3
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 1032- 1071 (72.41/46.57)	TAEHVLTAYSPLLRYHPTRFTFVRDTLAYFYGHL.PN...KLIL
 1127- 1170 (63.98/40.23)	TMESFCTTRSTTPGKSPASSTNSADNHKAFYHHQdPGsycQLVL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.86|      34|     761|     126|     160|       5
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  126-  160 (57.06/48.14)	ASVWL....RP..LVCNVMGAALEaELRPVASFDMLYLTVQ
  852-  891 (51.80/38.05)	AAAWVlmdcRPenFNCGNLGKALK.ELSPEDVTSNIYMLVD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.58|      22|     658|     237|     260|       6
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  237-  260 (40.39/28.85)	HM.LMFDH.HLQCPTFstLRSTA.LTY
  896-  920 (28.19/13.68)	HMhLQLQHgHSQQDLL..LRASAtLTY
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.52|      50|     343|      59|     117|       7
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   59-  117 (74.04/80.61)	DFLLFaLRTLARA......GLLRSD..MFLLA.FFRavamVESnpvaVTQAQSSPLVSTSGEPSTNIL
  404-  462 (68.48/48.96)	DFLEF.IEKLAGAfasgeqSIQRSNhvTWLLAqVFR....LET....VTQALSEDEDSRKVETAQKIL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.66|      15|      17|    1181|    1197|       8
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 1181- 1195 (28.59/21.19)	PTPPAQAVAMLVQIA
 1199- 1213 (29.08/14.03)	PTPPSQAYASASQSA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.63|      37|     194|     761|     800|       9
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  761-  800 (52.39/41.84)	EFEQLLVlQTALEQiLANSKHtWSE..KTMR.HFPQTLREVLA
  958-  997 (64.24/37.51)	EFQQLRV.QNYCRQ.HGQQEH.WLHpgPFQRvEPPQALGNHLA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.56|      31|     624|     820|     851|      11
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  820-  851 (55.71/40.17)	VLHQCQQLLAgDPAFAMSFVNHSFPPHRPFLC
 1447- 1477 (56.85/35.93)	VQHLFQHLTV.DPQRSIYAATHPKIAQRPLSC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26348 with Med23 domain of Kingdom Viridiplantae
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