<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26346

Description Uncharacterized protein
SequenceMRQVFTSEEDPSKNSPPFFQQDYHRKITAELVAKNTTSDRAQVAPGSSSLVAQQAQHQNQIMQQQQQLLQMRQAQAQVAQSSSNSTMQAQQVSVTQNPAAMRMMQARQQQQQQLYRMNPQQGLQQAASLLQQQQHLTGLSSQHQAASMLPPGAQSFQQQQLQMLQHQQQSLPLGMKIKAETPSASLDPTIDEQEAAWNKLQILKDKHLPHFQQVWDKLCVRKRSLPADQLPKLDYYMNYILKFIRVLSLSRDNPPKKFGLEMVDNCEKQILHTLKKNLPQQQQQQQPPATNPGQNAGPHAMHTSNQQQQASQLFQQQQQQQLKMLEDSKMGIRGMVDAKRHRARSAQPVPSPQTFQASSPHNVKVGSPVTPPHMTLPPIEEDDSDSKAAIQSTAPPLVLSPGISASPFLDLSASPAQAADPAGPDPLERLLKIVRTMSPKALSAGAREMASIVYLSDRLAATGPGPGCTAAVGEDLAAMTNSRERARALASTRGKPNSKRPLDSLALTVISPDGSVSNSLDGGGEADLESPEVISGWKRQKLEISYVLEQEIRDTNDHLIDTVVDISEDGSEEAASEGKKGLVLTFTYIPDMAVLPPLRVFVPPTYPEAPLFMSDHLDPNSNHSLLAVAREALTRALDYSRPVTVRAMARAWDECARKAVSAVSGESDRDSILSSTGTWIDCAAT
Length685
PositionTail
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.04
Grand average of hydropathy-0.577
Instability index59.93
Isoelectric point6.77
Molecular weight75227.06
Publications
PubMed=21551031

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26346
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     205.02|      32|      32|      41|      72|       1
---------------------------------------------------------------------------
   41-   71 (52.66/20.06)	....AQVAPGSSSLVAQQAQ....HQN....QIM....QQQQQ.L.LQM
   72-  117 (32.81/10.05)	RqaqAQVAQ.SSSNSTMQAQqvsvTQNpaamRMMqarqQQQQQ.L.YRM
  118-  148 (39.83/13.59)	N..pQQGLQQAASLLQQQ.Q....HLT....G.L....SSQHQ.A.ASM
  149-  175 (31.60/ 9.44)	......LPPGAQSF....QQ....QQL....QML....QHQQQsLpLGM
  291-  324 (48.11/17.76)	N.pgQNAGPHAMHTSNQQQQ....ASQ....LFQ....QQQQQ.Q.LKM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      66.83|      14|      71|     200|     213|       2
---------------------------------------------------------------------------
  200-  213 (26.37/14.14)	LQILKDKHLPHFQQ
  247-  260 (18.64/ 7.83)	LSLSRDNPPKKFGL
  271-  283 (21.82/10.42)	LHTLK.KNLPQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     150.92|      36|      41|     367|     402|       3
---------------------------------------------------------------------------
  367-  402 (67.27/40.43)	SPV....TPPHMTLPPIEEDDSDSKAAIQSTAPPLVLSPG
  406-  445 (48.59/26.95)	SPFldlsASPAQAADPAGPDPLERLLKIVRTMSPKALSAG
  446-  467 (35.06/17.18)	ARE....MASIVYL.......SDRLAA...TGP....GPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.28|      20|      53|     503|     522|       5
---------------------------------------------------------------------------
  503-  522 (34.94/24.72)	DSLALTV..ISPDGSVSNSLDG
  557-  578 (30.34/20.50)	DHLIDTVvdISEDGSEEAASEG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26346 with Med15 domain of Kingdom Viridiplantae
Unable to open file!