<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26339

Description Uncharacterized protein
SequenceMAERAAELARTAAERLESPLPWAVSACSVMHGAGVSMPSLDLAKAMVADVPSPQLMPFVDQSIASGLVFPMHMLSLLAAKVIPVRQQQPETYMMFLNLLDTYAFTLSLRTTVSSTERSLKSILEILELPFNGDAPKELGTVAVQFILALCCRLVDATAEDWSMALSSPSKPAGSYLTVNDFDDDFGRRRQEESEQARGNSLRALELVTNFLHHKKTSVLLRLARRNLSEQWGLFVQKLKFLEVIIRDTTLGAPRETGELFARLAAAIQQGLVQEQSNRRVVYKVLLDTNTSMSVFGNYWGTGRTAPWLPFDIFMEDALEGRRVPASSTAEALADLIKSLRAVQGASWHDVFLGLWIAGLRHVNREREHVEGPRPHVESRLCMLLSIVPLASAAVIEEEENSQQYNISRVDDSERGRRAAFVSSLQVLGQFEGLLCPPPIAVPAANQAAMKASAFVAGIKTTRDGYVPADGSTKAVGNMRHLIVEICISRGLLDASAYLWPGYAVAIPLSGSSQSSPWAAFMEGSSLAGPLKGALINTPASSVAELEKVYQIAINGAENERVAAASVLCGASLVRSWSIQEHAVRLAVRLVSPPVPAESRSGHPLMNYSSMLLAALGALTEVDAVHVLSLYGMFPELAAALLPICEVFGSATPAPQSTGEEVSPHMVFSVAFLLLLRLWKFHRPPLEHRLLGFESPLGGDLSLDYILQLRNLALSSQGTQPVHHVKLDSFPKLKAWYTQNQACVASTLSGLSGSGNPVHQNADRLLNMMFKRIKAAAPDETSARPMLPAWEIMTSVPFVLDAVLTACGHGRLSSKDLTTGLRDLVDFLPASIATIVSYFTAEVTRGLWKYASMNGNDWPSPAANLLSVEAEIKEILAATGVQVPNLVTGSLGGNAPVSLPLPLAAFLSLTITFRQDKSSELVLGVAGPALESTAGGSPWPSMPVVAALWAQKVKRWHSFIVFGASRTVFKQDKNAVKQLLRSCFAVTTGTTGTLMSKLQVHGGVGALLGHGGMQGGQYPLAPGILYLGIYPALHEIMFVTDEILFLVVKAARDLTAAKGTTSKISCASAMSRVFQASTLGASLLHISGGSTLVQTLYSESLPAWFLAGGNPEESSSSTSSGSGDGSLVEGYAVAHFALLSGALVWGISSTSTKTSHRTRRRRVLGSHMEFLASALDGKIALGCGRATWKAYLTGFIALLVSSTPNWILDVKLDVLKRLARGLRLWHEQELAVALLERGGPAAMGPAAELA
Length1249
PositionTail
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.07
Grand average of hydropathy0.159
Instability index48.12
Isoelectric point7.38
Molecular weight134128.06
Publications
PubMed=21551031

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26339
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.24|      25|     117|    1002|    1028|       1
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 1002- 1028 (41.60/28.28)	GVGALLghGGMQGGQYPLAPGILYLGI
 1122- 1146 (44.64/23.79)	GDGSLV..EGYAVAHFALLSGALVWGI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     245.34|      87|     184|     467|     605|       3
---------------------------------------------------------------------------
  300-  419 (113.28/115.27)	GTGRTAPWLPF..DIFMEDALEGRRV..PASSTAEaLADLIKSlrAVQGAswhdvflglwiaglrhvnrerehvEGPRPHVESRLCMlLSIVplASAAVieeEENSQQYNISRVD.....DSERGRRAA
  510-  605 (132.06/95.38)	GSSQSSPWAAFmeGSSLAGPLKGALIntPASSVAE.LEKVYQI..AINGA........................ENERVAAASVLCG.ASLV..RSWSI...QEHAVRLAVRLVSppvpaESRSGHPLM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.53|      36|      78|     823|     859|       5
---------------------------------------------------------------------------
  823-  859 (61.99/38.83)	LVDFLPASIaTIVSYFTAEVTRGLWKYA...SMNGNDWPS
  902-  940 (57.54/31.80)	LAAFLSLTI.TFRQDKSSELVLGVAGPAlesTAGGSPWPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.66|      32|     366|     691|     749|       7
---------------------------------------------------------------------------
  715-  749 (54.91/66.22)	SQGTQPVHHVKLDSFPklkAWY...TQNQACVASTLSG
 1086- 1120 (51.75/18.38)	SGGSTLVQTLYSESLP...AWFlagGNPEESSSSTSSG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26339 with Med33 domain of Kingdom Viridiplantae
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