<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26338

Description Uncharacterized protein
SequenceMSNVPPPMSSQAAYPPPMQMRPNQASGPFAQPQRPPQGPPGMYGSAVPFPQQGNAYPGSYQVGNPGQLLQSYPVNAGQTNNGMAQGLHSGVPPPGSRASEWQEHFSPDGRRYYYNKRTKQSSWEKPDELMTPTERADASTVWKEFVTADSRKYYYNKLTRQSTWTMPEEMRVAREQADRGYMGVAKMETAPAPVAQTLTPAATGTPSPAPLAGSGADVAEATEETQQTQQDLEVGSKCGFLCILRFEYPQEAKKSLPSIELLEAMHVQSDWTWDQAMRVIINDKRYGALKSLGERKQAFNEYLAQRKKLDLEEKRLKQKKAREDFIKMLEESKELTSAMRWSKVVSLFESDPRFHAVDKEREREDLFDDYLLDLERKERDKAREEKKKSRADFRSYLESCDFIKVNSHWRKIQDKLDDDERWSRLDKMDRLEVFQEYIRDLEKEEEEEKKMQKEQIRRKERKNRDEFRSLLESHKAAGILVARCPWRDYLAKIKEHPAYQAICTNLSGSTPKELFMDVLEELDKLYLEDKAKIKEIMKVGKITVVPTTTYDDFKAALAEAGDLTAISELHIKLAFEDALERLKEKEEKEAKKRRRLAEEFSTLLRSNKVSGDRLAGKETVEFRAIDDEVVLRKLFDEHVAHLQQKLKEKDRKREKEEKKDKDKDSKDDKDKERKKDKSSKKDRNEDGEPALSKEEKKKDKDRDRDKEKRHRRRHRSASSDDGSDRDDRDEARKSRKHGHEHRRSSRRHGHDSDSDAEAKPKRQKRERRSTEELEDGEILGLHSWSCLFVDRLRGSGFWY
Length799
PositionUnknown
OrganismSelaginella moellendorffii (Spikemoss)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Lycopodiopsida> Selaginellales> Selaginellaceae> Selaginella.
Aromaticity0.07
Grand average of hydropathy-1.200
Instability index56.18
Isoelectric point8.68
Molecular weight92930.23
Publications
PubMed=21551031

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26338
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     169.57|      32|      32|     649|     680|       1
---------------------------------------------------------------------------
  363-  396 (33.66/12.34)	REDLFDDyllDLERK.ERDKA...REEKKKSRADFRSY
  655-  686 (51.05/22.71)	KEEKKDK...DKDSKDDKDKE...RKKDKSSKKDRNED
  693-  720 (30.35/10.36)	KEEKK.K...DKDR..DRDKEkrhRRRHRSASSD....
  721-  745 (29.55/ 9.88)	....DGS...D...RDDRDEA...RKSRKHGHEHRRSS
  746-  769 (24.97/ 7.15)	RRHGHDS...DSDA.EAKPKR...QKRERRS.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     177.05|      36|      39|      94|     129|       2
---------------------------------------------------------------------------
   40-   87 (46.71/25.08)	PGMY..GSA.VP..FPQQGNAYpgsYqvgnpgqllqsYPVNAGQTNNGMAQGL
   94-  129 (71.63/42.12)	PGSR..ASE.WQEHFSPDGRRY...Y...........YNKRTKQSSWEKPDEL
  132-  170 (58.72/33.29)	PTERadASTvWKEFVTADSRKY...Y...........YNKLTRQSTWTMPEEM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     200.78|      53|      58|     543|     595|       5
---------------------------------------------------------------------------
  457-  501 (51.32/29.45)	RRKERKNRDEFRSLLEShkaAGILVA.......RCPWRDYLAKIKEHPAYQA.....
  543-  595 (82.96/52.42)	TVVPTTTYDDFKAALAE...AGDLTAI.SELHIKLAFEDALERLKEKEEKEAKKRRR
  602-  653 (66.49/40.46)	TLLRSNKVSGDRLAGKE...TVEFRAIdDEVVLRKLFDEHVAHLQQKL.KE.KDRKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.51|      13|      16|       5|      17|       6
---------------------------------------------------------------------------
    5-   17 (28.49/15.70)	PPPMSSQAAYP..PP
   22-   36 (23.02/11.40)	PNQASGPFAQPqrPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.60|      21|      78|     432|     454|       7
---------------------------------------------------------------------------
  299-  319 (34.30/17.73)	FNEYLAQRKKLDLEEKRLKQK
  434-  454 (35.30/17.15)	FQEYIRDLEKEEEEEKKMQKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.98|      14|     359|     414|     431|       8
---------------------------------------------------------------------------
  346-  359 (24.43/ 8.15)	SLFESDPRFHAVDK
  414-  427 (25.55/19.90)	DKLDDDERWSRLDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.88|      15|      15|     191|     205|       9
---------------------------------------------------------------------------
  191-  205 (26.90/17.80)	PAPVAQTLTPAATGT
  208-  222 (25.99/16.96)	PAPLAGSGADVAEAT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26338 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AHLQQKLKEKDRKREKEEKKDKDKDSKDDKDKERKKDKSSKKDRNEDGEPALSKEEKKKDKDRDRDKEKRHRRRHRSASSDDGSDRDDRDEARKSRKHGHEHRRSSRRHGHDSDSDAEAKPKRQKRERRSTEELE
2) APVAQTLTPAATGTPSPAPLAGSGADVAEATEETQQTQQ
3) MSNVPPPMSSQAAYPPPMQMRPNQASGPFAQPQRPPQGPPGMYGSAVPFPQQGNAYPGSYQVGNPGQLLQSYPVNAGQTNNGMAQGLHSGVPPPGSRASEWQEHFSPDGRRYYYNKRTKQSSWEKPDELMTPTERADASTVW
640
192
1
774
230
142










Molecular Recognition Features






MoRF SequenceStartStop




NANANA