<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26329

Description Uncharacterized protein (Fragment)
SequenceREEPDSERDAPTYECVPPPWLPQVHRTADLGYTGFYPPKPGQDEDLLTETNIKKGFQLGHAVAGETLSAQPVITGELYKKEEESNALPLLEQLMNEVFSRRAEQNAAIPSSTFRMPSRVTLNETKRQSWLADLANPDVPLAKLGKSIPHGPKGHDLFELLYTNKVAIPRAIWFLRALGANETAGLRNKANYDPTKYSLDWANTVTGYLKKQLSEIVLPSAPRPGLGNIKQTFKGVLLDDENREKWVSRFSYCLQLLRTFYVDGLVDHRLFLAWLIEQLATCNLAQAGFVVRLAFEYLEDTLHCRAFSRPLADACLTKLSEISTASASDHLFGTERLLKVIVQRILIAIPEAFVSPRMWTTHSSLIERMAAEELLSPSTDQRVEQRAREVMQRLADSFADIKRRNEALLFLHMPSRVGGLARTVKDVQLLNSISSQTDIGELPFFLDCGDSAPRFAAKLDMLLSWSVTPLQFGDHRIFAAVSLIANWKDQALERAVRRAGSANAARRDTPSPSEFLQDQLFDWLDGSDIAAAEENIRDVASLYGELVRRGLFSYDLYVQRLIARVEQGLTVAEEHRSRHRNFLQWIPLNDMQTTPSLTSQRRVTLYGVRARKTPEDQNEREIRATIRNVLPEVFDREPRVFLSVNELASECRLFLSASRYEQTRVARTWLFPLLQTYISKGDASSSETMLRVFCTATELYRLAKCYQCILDITLCALEHAATFDTLMAVMNTLRRHGTIWACMNARGRIIEALYHAHQLWKARGIQVRKMLDFLTELDQGKYLDLEAQGHVQADMISLTSALQPTTIQPSFAVPDVMPEILVLATNPASDPSMLANHLWISYRAAHDWGWKVWDNTFASLRQVPVISPDDADRQSLALRYGTFLLHIDQHLPHGLDRDILQWFESPGPNELLVLTPDMWTVLATVLVFLVVHGALRTTTVLQGLICSVWRRGSQVATDAQAEQLAPWMRAANDICRELMIKQEARGDGMPPADLIQIQAIRTARREAFRAVGFPMLASSIPLLVLLKHNEFLEQGIRDDASEIRACLCADADFRRAVFRDLDVVREAFEHALKTSETSSAREVISADLIQSLNIMLCDTPSDHDFSDMQNLTSMLSPWTIAATAIHLKFLLRRMGHALSQDPQDHAANKVLRHVTAQLFDESVSEEKAQFIAQVVSGADALTAGKFVNSGLQCILKSLEGVQDVPGLFPALKRSGELLRALVDVATPFRFGPACIQLDESLQDKFLTVIATILGIVLQTLGGSQVQWEDEETKNAVILLARLVQFVLGFETPPSPKSKEVSAQVMSSLLSLALSYGSGLHPDFVLFPLLIDTLFFLVDGPSPPPKATTPFDPYARYPDPVSITPPPDLPPEHSRALRILTPHLPPPAIVAHLASAQRDPTTDELLPTAPVPNRPWEWIEHLGELPGETDPYLQERARQQPLPAPREGMPSVRNAGSLPLELFAARGTGEGVMANVPGVDARTRGTLVGFQDGVAGEGLFARAWR
Length1503
PositionKinase
OrganismSchizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Agaricomycetidae> Agaricales> Schizophyllaceae> Schizophyllum.
Aromaticity0.08
Grand average of hydropathy-0.145
Instability index47.14
Isoelectric point5.78
Molecular weight167905.18
Publications
PubMed=20622885

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26329
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     205.76|      44|      46|    1362|    1405|       1
---------------------------------------------------------------------------
   17-   40 (27.20/ 8.44)	..PP.PWLPQVHRTADLGYTGFYPPkP...................
 1339- 1360 (28.97/ 9.49)	....................PS.PP.PKATTPFDPYARYP..DPVS
 1361- 1404 (78.27/38.68)	ITPP.PDLPPEHSRALRILTPHLPP.PAIVAHLASAQRDPTTDELL
 1405- 1447 (71.32/34.56)	PTAPvPNRPWEWIEHLGELPGETDP...YLQERARQQPLPAPREGM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     409.63|     141|     200|     732|     928|       2
---------------------------------------------------------------------------
  732-  894 (213.85/169.95)	LRRHGTIWA..C.MNARGRIIEALYHAHQL..WkargiqVRKMLDFLTELdqgkYLDLEAQ..GHVQADMISLtSALQpTTIQPSF.AV..P...DVMPEILVLATNPASDPSMLANHLWIsyRAAhdwgwKVWDNTF..ASLRQVPVISP..DDADRQSlalRYGTFLLHIDQHLPHGL
  934- 1091 (195.78/153.57)	LRTTTVLQGliCsVWRRGSQVATDAQAEQLapW......MRAANDICREL....MIKQEARgdGMPPADLIQI.QAIR.TARREAFrAVgfPmlaSSIPLLVLLKHNEFLEQGIRDDASEI..RAC.....LCADADFrrAVFRDLDVVREafEHALKTS...ETSSAREVISADLIQSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.51|      14|     193|     913|     928|       3
---------------------------------------------------------------------------
  913-  928 (22.38/18.23)	LTPdmWTVLATV..LVFL
 1114- 1129 (23.13/11.52)	LSP..WTIAATAihLKFL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26329 with Med12 domain of Kingdom Fungi
Unable to open file!