<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26325

Description Uncharacterized protein (Fragment)
SequenceMSLQTLTRNCFQSGLPPRKWLNACKLFLKNNELMGENQVTLSNSVLCLYPSYPGDPDLTEYLKQAIQDQMIDLPVFVSTFLKAARSPDFRNAATLDTLCRVALDAHYLNGIPPLGSVIDFNVSINDHLDILTDALNLVAIAHSLPLTHFHQLTRSAEELATLVLVCVGDVKQLTASTARSQVMNAHDLVIHCADALTNEFKTLLDQWIFNLHGMLNDNEKAMEELMHSAQAATGKGDMLGQSSEMDIVRLRGLDRFGAGSGMDPVALLAAMYRWTSWSPTVFYRQLLHACISCMAEESGKSILVWKAFFVGRLPVILTSFEKEVSAEGVAIDWKSAMHAAAVYLKQLASVTSCDVHLAGHDLPNDSSPTAIPSSILRDFVQEAAVNGLLDKSTALSIDHHLTNEPSTPLRVEVRDSGGDVEAYMTAKLENIDLADLELW
Length439
PositionTail
OrganismSchizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Agaricomycetidae> Agaricales> Schizophyllaceae> Schizophyllum.
Aromaticity0.07
Grand average of hydropathy0.052
Instability index43.58
Isoelectric point5.08
Molecular weight48251.68
Publications
PubMed=20622885

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26325
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.57|      16|      30|     362|     377|       1
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  362-  377 (28.73/19.28)	LPNDSSPTAIPSSILR
  395-  410 (29.84/20.29)	LSIDHHLTNEPSTPLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.95|      25|      25|     282|     306|       2
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  277-  304 (39.46/24.72)	WSptvFYRQLLHACISCMAEE.SGKSILV
  305-  331 (33.49/20.05)	WK..aFFVGRLPVILTSFEKEvSAEGVAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.80|      22|      28|      88|     111|       3
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   88-  111 (29.38/28.53)	DFrNAATLDTLcRVALDAHYLNGI
  119-  140 (37.42/23.78)	DF.NVSINDHL.DILTDALNLVAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.58|      13|      33|     185|     197|       4
---------------------------------------------------------------------------
  185-  197 (23.31/16.03)	AHDLVIHCADALT
  221-  233 (22.27/15.01)	AMEELMHSAQAAT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26325 with Med5 domain of Kingdom Fungi
Unable to open file!