<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26323

Description Uncharacterized protein
SequenceMRLYRSTIQMLPGMIGAERSMTTFTQTSPDAAFVLIEDPLAMQGSMSAMSQDQPTPSHYQYTLVPVSPPGALEQLLQQLNAPWTMRQAGGGSNQSGRQLLIDGHIFTIGSDWVVCVGNVILAGGTLKGMILEAEYLPIPDLRSPLGDGNPEFISGFLISLLPNIPDARNVICTIPDNIWEDVLWDREAEERKWLAGIEERRKAQEEKRKAQEEKGKAQDEKGKADAARDLASEGTLGSVASSDTMATAPPDSQPPSQSQTQPSQSQAESSQTHTSQSQPSQSDAMDEDKAPPADPSAPSDTTEAAPQPPSTSQPPPSTSTSQPPPSQPAPSSAQPPPPPSDDDIFASPDDPEPFSKYDWIGPERDRRSAFSIIMALRSEGLL
Length382
PositionHead
OrganismSchizophyllum commune (strain H4-8 / FGSC 9210) (Split gill fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Agaricomycetidae> Agaricales> Schizophyllaceae> Schizophyllum.
Aromaticity0.05
Grand average of hydropathy-0.626
Instability index82.64
Isoelectric point4.41
Molecular weight41126.15
Publications
PubMed=20622885

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26323
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     132.12|      29|      29|     282|     310|       2
---------------------------------------------------------------------------
  282-  310 (56.38/19.27)	SD...AMDEDKAPPADPSAPSDTTEAAPQPPS
  312-  340 (42.99/13.14)	SQpppSTSTSQPPPSQP.APS..SAQPPPPPS
  342-  363 (32.75/ 8.45)	DD...IF....ASPDDPEPFSKYDWIGPE...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.00|      18|      23|     186|     207|       3
---------------------------------------------------------------------------
  186-  204 (27.44/28.25)	REAEERKWLAGiEERRKAQ
  208-  225 (30.55/16.49)	RKAQEEKGKAQ.DEKGKAD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.86|      23|      25|      20|      44|       4
---------------------------------------------------------------------------
   20-   44 (36.19/28.48)	SMTTFTQTSPDAA...FVLIedPLAMQG
   45-   70 (37.67/22.79)	SMSAMSQDQPTPShyqYTLV..PVSPPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.06|      10|      22|     247|     257|       5
---------------------------------------------------------------------------
  247-  257 (16.17/10.40)	TAPPDSQpPSQ
  272-  281 (19.89/ 7.85)	THTSQSQ.PSQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26323 with Med20 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) WLAGIEERRKAQEEKRKAQEEKGKAQDEKGKADAARDLASEGTLGSVASSDTMATAPPDSQPPSQSQTQPSQSQAESSQTHTSQSQPSQSDAMDEDKAPPADPSAPSDTTEAAPQPPSTSQPPPSTSTSQPPPSQPAPSSAQPPPPPSDDDIFASPDDPEPFSKYDWIGPERDRRSAFSIIMALRSEGLL
193
382










Molecular Recognition Features






MoRF SequenceStartStop




1) DDPEPFSKYDWIGPERDRRSAFS
349
371