<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26310

Description Uncharacterized protein
SequenceMDRDEFRLILRNSGVDVWEFINTAISVAYSDYGDELRHRRDGIVERMYMSSRCGSCNLRYQHSGLDKGCDEEKEDEKDDEKDKSPLTPQSINRSGSEDRYGGLLDEEEARILDIKEHLEAPDQPDDSIVDLLQTLADMDITFKALKETDIGRHVNRLRKHPSNDVRRLVKHLVRKWKDLVDEWVKSNPAGEFTSSALMAEGDSPPQKIPRTGHHQVPDFGYSPNPQNGSSGSDKNNAEPEPKVKAIPRKEVPTRPAQSAPVSSSFPPPNKQRDTAIDPDKFASARKRLHENYQEAQNAKKQRTIQVMDIHDIPKPKNTFFAKPKVGSQGRHR
Length332
PositionUnknown
OrganismVitis vinifera (Grape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> Vitales> Vitaceae> Viteae> Vitis.
Aromaticity0.06
Grand average of hydropathy-1.065
Instability index46.43
Isoelectric point6.44
Molecular weight37755.61
Publications
PubMed=17721507

Function

Annotated function 
GO - Cellular Component
cytosol	GO:0005829	IEA:EnsemblPlants
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26310
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.28|      28|      36|     187|     217|       1
---------------------------------------------------------------------------
  187-  217 (47.19/31.07)	NP.AGEFTSSALMAEGDSPPQKIPRtghHQVP
  224-  252 (45.09/22.88)	NPqNGSSGSDKNNAEPEPKVKAIPR...KEVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.34|      23|      38|     113|     135|       3
---------------------------------------------------------------------------
  113-  135 (38.29/23.50)	DIKEHL.EAPDQPDDSIVDLLQTL
  149-  172 (35.06/20.91)	DIGRHVnRLRKHPSNDVRRLVKHL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26310 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GEFTSSALMAEGDSPPQKIPRTGHHQVPDFGYSPNPQNGSSGSDKNNAEPEPKVKAIPRKEVPTRPAQSAPVSSSFPPPNKQRDTAIDPDKFASARKRLHENYQEAQNAKKQRTIQVMDIHDIPKPKNTFFAKPKVGSQGRHR
2) GLDKGCDEEKEDEKDDEKDKSPLTPQSINRSGSEDR
190
64
332
99










Molecular Recognition Features






MoRF SequenceStartStop




1) ARKRLHENYQE
2) LDIKEH
3) MDIHDIPKPKNTFFAKPKVGSQGRHR
4) VKAIPRK
284
112
307
243
294
117
332
249