<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26305

Description Uncharacterized protein
SequenceMDDVGCKTVVNESGVDAEGWRAGFNWDAREKVVNRIVETLKNQVPCSDANALNELKNVAVKFEDKIFCDAATKDDYTYRICHRMLKMENLKYQNVSTSSSTPGISQTTKLEVVGHSSSLQNVSGFSHELVGNSVGQHVRSNAFANTQREMQGSQPSQQVAFQPHQRQHLPHQFLKQKVQKQNIHPSFMQPNIHYSHHDRQQQQILSQPTPLQSSQQLMLPTQQPRQLIGQQLNTTLLQQNHQFGQQNNLSEHQLQQPSFYMQNMSNSFQQPLNPQSNVSGVQQQQKIVGPQSDVLNMQVHQHSVNILQQAETNTAQKNVPWTSQTLQLHKLLGSQQKNNSLPESSPHRPQTSPALLQPQNVIDKQKQLLKSQRVLPEASSVPVESTAHIENPNTADWYDQAYQKVIL
Length407
PositionTail
OrganismVitis vinifera (Grape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> Vitales> Vitaceae> Viteae> Vitis.
Aromaticity0.05
Grand average of hydropathy-0.816
Instability index58.97
Isoelectric point8.57
Molecular weight46083.90
Publications
PubMed=17721507

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26305
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.27|      14|      15|     111|     125|       1
---------------------------------------------------------------------------
  111-  125 (20.93/15.84)	EVVGHSSSlQNV..SGF
  128-  143 (18.35/ 8.56)	ELVGNSVG.QHVrsNAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     158.02|      27|      32|     155|     181|       2
---------------------------------------------------------------------------
  155-  181 (48.83/19.28)	PS...QQVAFQPHQRQHLPHQFLKQKVQKQ
  185-  212 (38.53/13.81)	PSfmqPNIHYSHHDRQQ..QQILSQPTPLQ
  213-  239 (41.35/15.30)	SS...QQLMLPTQQPRQLIGQQLNTTLLQQ
  243-  262 (29.31/ 8.91)	FG...QQNNLSEHQLQQ.P.SFYMQ.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.81|      23|      40|     329|     351|       3
---------------------------------------------------------------------------
  329-  351 (45.73/22.48)	HKLLGSQQ...KNNSLP.ESSPH..RPQT
  366-  394 (24.08/ 8.68)	KQLLKSQRvlpEASSVPvESTAHieNPNT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.87|      12|      41|     266|     278|       4
---------------------------------------------------------------------------
  266-  278 (17.72/ 9.38)	NSfQQPLNPQSNV
  283-  294 (21.15/ 7.50)	QQ.QKIVGPQSDV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26305 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HPSFMQPNIHYSHHDRQQQQILSQPTPLQSSQQLMLPTQQPR
2) IGQQLNTTLLQQNHQFGQQNNLSEHQLQQPSFYMQNMSNSFQQPLNPQSNVSGVQQQQKI
3) LQLHKLLGSQQKNNSLPESSPHRPQTSPALLQPQNVID
4) QHVRSNAFANTQREMQGSQPSQQVAFQPHQRQHLPHQFLKQKVQKQN
184
228
326
136
225
287
363
182










Molecular Recognition Features






MoRF SequenceStartStop




NANANA