<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP26303

Description Uncharacterized protein
SequenceMDADYKKFGKGPRELSGAVDLINHYKLLPHHEFFCKRSLPLSISETHYLRSVVGGTEIRKGEGMELDQLFHSTFYLRERNAGIHPFDLDILREAFQMRETTPVELSSAEKGIPTCVPKSKNEPKDKERKHKKSKDKAKDRKKHRHHPKDSSSDKNKDKCRIGNRDSGIEQKQQDKKRKHDGNGDVSYIQSHLKTERRNSQIKMGMQRETR
Length210
PositionHead
OrganismVitis vinifera (Grape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> Vitales> Vitaceae> Viteae> Vitis.
Aromaticity0.06
Grand average of hydropathy-1.295
Instability index47.87
Isoelectric point9.70
Molecular weight24433.43
Publications
PubMed=17721507

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
transcription factor binding	GO:0008134	IBA:GO_Central

GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP26303
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.39|      18|      18|     148|     165|       1
---------------------------------------------------------------------------
  106-  121 (18.03/ 6.48)	..SSAEKGIPTCVPKSKN
  128-  145 (27.50/13.40)	RKHKKSKDKAKDRKKHRH
  148-  165 (30.86/15.87)	KDSSSDKNKDKCRIGNRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.41|      19|      19|      70|      88|       2
---------------------------------------------------------------------------
   46-   66 (16.18/ 7.30)	...THYLRSVVGGTeirkgEGMEL
   70-   88 (35.51/22.83)	FHSTFYLRERNAGI.....HPFDL
   91-  105 (24.72/14.16)	LREAFQMRETT.........PVEL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP26303 with Med19 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SSAEKGIPTCVPKSKNEPKDKERKHKKSKDKAKDRKKHRHHPKDSSSDKNKDKCRIGNRDSGIEQKQQDKKRKHDGNGDVSYIQSHLKTERRNSQIKMGMQRETR
106
210










Molecular Recognition Features






MoRF SequenceStartStop




1) EQKQQD
2) KERKHKKSKDKAKDRKKHRHHPKDS
3) SYIQSHL
169
126
186
174
150
192